Gridifying the TINKER conformer generator application for gLite grid

Kertesz, A., Otvos, F. and Kacsuk, P. 2011. Gridifying the TINKER conformer generator application for gLite grid. in: Guarracino, M.R., Vivien, F., Larsson Traff, J., Cannataro, M., Danelutto, M., Hast, A., Perla, F., Knupfer, A., Di Martino, B. and Alexander, M. (ed.) Euro-Par 2010 parallel processing workshops Springer.

Chapter titleGridifying the TINKER conformer generator application for gLite grid
AuthorsKertesz, A., Otvos, F. and Kacsuk, P.
EditorsGuarracino, M.R., Vivien, F., Larsson Traff, J., Cannataro, M., Danelutto, M., Hast, A., Perla, F., Knupfer, A., Di Martino, B. and Alexander, M.
Abstract

Grid Computing provides an efficient way for parallelizing and gridifying computationally and data intensive applications of various research fields. One of these application areas is molecular dynamics. In this paper we examine a biochemical application that generates conformers by unconstrained molecular dynamics at high temperature to overcome conformational bias then finishes each conformer by simulated annealing and energy minimization to obtain reliable structures. We provide a general way for turning biochemical applications into Grid workflows that can be executed by Grid portals exploiting the computational power of available production Grids. First we describe the gridification process, then provide experimental results that show the achieved speed-up of the ported application.

Book titleEuro-Par 2010 parallel processing workshops
Year2011
PublisherSpringer
Publication dates
Published2011
SeriesLecture notes in computer science
ISBN9783642218774
Digital Object Identifier (DOI)https://doi.org/10.1007/978-3-642-21878-1_23
Journal citation(6586), pp. 185-192

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Balaton, Z., Farkas, Z., Gombas, G., Kacsuk, P., Lovas, R., Marosi, A.C., Emmen, E., Terstyanszky, G., Kiss, T., Kelley, I., Taylor, I. and Araujo, F. 2008. EDGeS, the common boundary between service and desktop grids. Parallel Processing Letters. 18 (3), pp. 433-445. https://doi.org/10.1142/S012962640800348X

Special Section: Grid-enabling legacy applications and supporting end users
Kacsuk, P. and Terstyanszky, G. 2008. Special Section: Grid-enabling legacy applications and supporting end users. Future Generation Computer Systems. 24 (7), pp. 709-710. https://doi.org/10.1016/j.future.2008.04.002

Subjective trust based decision strategies utilizing the Grid reputation-policy trust management service
Zetuny, Y., Terstyanszky, G., Winter, S. and Kacsuk, P. 2008. Subjective trust based decision strategies utilizing the Grid reputation-policy trust management service. in: Proceedings of the UK e-Science All Hands Meeting 2008, Edinburgh, UK, 8th - 11th September 2008 Edinburgh National e-Science Centre.

Reputation-policy trust model for grid resource selection
Zetuny, Y., Terstyanszky, G., Winter, S. and Kacsuk, P. 2008. Reputation-policy trust model for grid resource selection. in: Kacsuk, P., Lovas, R. and Nemeth, Z. (ed.) Distributed and parallel systems: in focus: desktop grid computing Boston, MA Springer. pp. 195-206

Implementation of the ABC quantum mechanical reactive scattering program on the EGEE grid platform
Skouteris, D., Costantini, A., Lagana, A., Sipos, G., Balasko, A. and Kacsuk, P. 2008. Implementation of the ABC quantum mechanical reactive scattering program on the EGEE grid platform. in: Gervasi, O., Murgante, B., Lagana, A., Taniar, D., Mun, Y. and Gavrilova, M.L. (ed.) Computational science and its applications: ICCSA 2008, international conference, Perugia, Italy, June 30 – July 3, 2008, Proceedings, Part I Springer.

A checkpointing mechanism for the Grid environment
Sajadah, K., Terstyanszky, G., Winter, S. and Kacsuk, P. 2008. A checkpointing mechanism for the Grid environment. in: Proceedings of the UK e-Science All Hands Meeting 2008, Edinburgh, UK, 8th - 11th September 2008 Edinburgh National e-Science Centre.

Checkpointing of parallel applications in a grid environment
Sajadah, K., Terstyanszky, G., Winter, S. and Kacsuk, P. 2008. Checkpointing of parallel applications in a grid environment. in: Kacsuk, P., Lovas, R. and Nemeth, Z. (ed.) Distributed and parallel systems: in focus: desktop grid computing Boston, MA Springer. pp. 179-187

SZTAKI desktop grid: building a scalable, secure platform for desktop grid computing
Marosi, A.C., Gombas, G., Balaton, Z., Kacsuk, P. and Kiss, T. 2008. SZTAKI desktop grid: building a scalable, secure platform for desktop grid computing. in: Making grids work: Proceedings of the CoreGRID Workshop on Programming Models Grid and P2P System Architecture Grid Systems, Tools and Environments 12-13 June 2007, Heraklion, Crete, Greece Springer. pp. 365-376

Enabling Java applications for BOINC with DC-API
Marosi, A.C., Gombas, G., Balaton, Z. and Kacsuk, P. 2008. Enabling Java applications for BOINC with DC-API. in: Kacsuk, P., Lovas, R. and Nemeth, Z. (ed.) Distributed and parallel systems: in focus, desktop grid computing Springer. pp. 3-12

EDGeS: integrating EGEE with desktop grids
Lovas, R., Kacsuk, P. and Lodygensky, O. 2008. EDGeS: integrating EGEE with desktop grids. 3rd EGEE User Forum. Clermont-Ferrand, France

A general and scalable solution for heterogeneous workflow invocation and nesting
Kukla, T., Kiss, T., Terstyanszky, G. and Kacsuk, P. 2008. A general and scalable solution for heterogeneous workflow invocation and nesting. in: Proceedings of the 3rd Workshop on Workflows in Support of Large-Scale Science, in conjunction with SC 2008, Austin, TX, USA, November 17 2008 IEEE . pp. 1-8

Utilizing heterogeneous data sources in computational grid workflows
Kiss, T., Tudose, A., Terstyanszky, G., Kacsuk, P. and Sipos, G. 2008. Utilizing heterogeneous data sources in computational grid workflows. in: Danelutto, M., Fragopoulou, P. and Getov, Vladimir (ed.) Making grids work: Proceedings of the CoreGRID Workshop on Programming Models Grid and P2P System Architecture Grid Systems, Tools and Environments 12-13 June 2007, Heraklion, Crete, Greece Springer. pp. 225-236

Towards Grid data interoperation: OGSA-DAI data resources in computational Grid workflows
Kiss, T., Kukla, T., Terstyanszky, G., Kacsuk, P. and Sipos, G. 2008. Towards Grid data interoperation: OGSA-DAI data resources in computational Grid workflows. in: Proc. of the CoreGRID Workshop “Integrated Research in Grid Computing”, Heraklion-Crete, Greece, 2-4 April 2008 Crete University Press.

Workflow level interoperation of grid data resources
Kiss, T., Kacsuk, P., Terstyanszky, G. and Winter, S. 2008. Workflow level interoperation of grid data resources. in: Priol, T., Lefevre, L. and Buyya, R. (ed.) CCGrid 2008 8th IEEE International Symposium on Cluster Computing and the Grid IEEE . pp. 194-201

Meta-broker for future generation grids: a new approach for a high-level interoperable resource management
Kertesz, A. and Kacsuk, P. 2008. Meta-broker for future generation grids: a new approach for a high-level interoperable resource management. in: Talia, D., Yahyapour, R. and Ziegler, W. (ed.) Grid middleware and services: challenges and solutions Springer. pp. 53-63

Automatic service deployment using virtualisation
Kecskemeti, G., Kacsuk, P., Terstyanszky, G., Kiss, T. and Delaitre, T. 2008. Automatic service deployment using virtualisation. in: Proceedings of the 16th Euromicro Conference on Parallel, Distributed and Network-Based Processing (PDP 2008), Toulouse, France, February 13-15, 2008 Los Alamitos, USA IEEE . pp. 628-635

Virtual appliances: a way to provide automatic service deployment
Kecskemeti, G., Kacsuk, P., Delaitre, T., Terstyanszky, G., Davoli, F., Meyer, N., Pugliese, R. and Zappatore, S. 2008. Virtual appliances: a way to provide automatic service deployment. INGRID 2008. Lacco Ameno, Island of Ischia, Italy 9 - 11 April 2008 Springer. pp. 425-436 https://doi.org/10.1007/978-1-4419-5597-5_7

Supporting dynamic parameter sweep applications in workflows: lessons learnt from the CancerGrid project
Kacsuk, P., Kovacs, J., Sipos, G., Hermann, G. and Karoczkai, K. 2008. Supporting dynamic parameter sweep applications in workflows: lessons learnt from the CancerGrid project. 9th International Workshop on State-of-the-Art in Scientific and Parallel Computing. Trondheim, Norway 13th - 16th May 2008

Can we connect existing production grids into a world wide grid?
Kacsuk, P., Kertesz, A. and Kiss, T. 2008. Can we connect existing production grids into a world wide grid? in: High Performance Computing for Computational Science - VECPAR 2008 Springer. pp. 109-122

WS-PGRADE: supporting parameter sweep applications in workflows
Kacsuk, P., Karoczkai, K., Hermann, G., Sipos, G. and Kovacs, J. 2008. WS-PGRADE: supporting parameter sweep applications in workflows. in: Third workshop on workflows in support of large-scale science. WORKS 2008. IEEE . pp. 1-10

Towards making BOINC and EGEE interoperable
Kacsuk, P., Farkas, Z. and Fedak, G. 2008. Towards making BOINC and EGEE interoperable. in: IEEE Fourth International Conference on eScience IEEE . pp. 478-484

EDGeS: a bridge between desktop grids and service grids
Fedak, G., He, H., Lodygensky, O., Balaton, Z., Farkas, Z., Gombas, G., Kacsuk, P., Lovas, R., Marosi, A.C., Kelley, I., Taylor, I., Terstyanszky, G., Kiss, T., Cardenas-Montes, M., Emmen, E. and Araujo, F. 2008. EDGeS: a bridge between desktop grids and service grids. in: 3rd ChinaGrid Annual Conference, ChinaGrid2008 IEEE . pp. 3-9

Utilizing the EGEE infrastructure for desktop grids
Farkas, Z., Kacsuk, P. and Rubio del Solar, M. 2008. Utilizing the EGEE infrastructure for desktop grids. in: Kacsuk, P., Lovas, R. and Nemeth, Z. (ed.) Distributed and parallel systems: in focus, desktop grid computing Springer. pp. 27-35

EDGeS: bridging desktop and service grids
Cárdenas-Montes, M., Emmen, E., Marosi, A.C., Araujo, F., Gombas, G., Kiss, T., Fedak, G., Kelley, I., Taylor, I., Lodygensky, O., Kacsuk, P., Lovas, R., Balaton, Z. and Farkas, Z. 2008. EDGeS: bridging desktop and service grids. in: IBERGRID'2008, Iberian Grid Infrastructure Conference Netbiblo. pp. 212-224

SZTAKI desktop grid: distributed computing in Hungary
Balaton, Z., Gombas, G., Kacsuk, P., Kornafeld, A., Kovacs, J., Marosi, A.C., Podhorszki, N. and Vida, G. 2008. SZTAKI desktop grid: distributed computing in Hungary. in: Weber, M.H.W. (ed.) Distributed and grid computing: science made transparent for everyone. Principles, applications and supporting communities Berlin Rechenkraft.net.

EDGeS: the common boundary between service and desktop grids
Balaton, Z., Farkas, Z., Gombas, G., Kacsuk, P., Lovas, R., Marosi, A.C., Terstyanszky, G., Kiss, T., Lodygensky, O., Fedak, G., Emmen, E., Kelley, I., Taylor, I., Cardenas-Montes, M. and Araujo, F. 2008. EDGeS: the common boundary between service and desktop grids. in: Gorlatch, S., Fragopoulou, P. and Priol, T. (ed.) Grid computing: achievements and prospects Springer. pp. 37-48

Solving the grid interoperability problem by P-GRADE portal at workflow level
Kacsuk, P., Kiss, T. and Sipos, G. 2008. Solving the grid interoperability problem by P-GRADE portal at workflow level. Future Generation Computer Systems. 24 (7), pp. 744-751. https://doi.org/10.1016/j.future.2008.02.008

Towards a scientific workflow-oriented computational World Wide Grid
Kacsuk, P. and Kiss, T. 2007. Towards a scientific workflow-oriented computational World Wide Grid. CoreGRID. https://doi.org/CoreGRIDTechnicalReportNumberTR-0115

Meta-Brokering requirements and research directions in state-of-the-art Grid Resource Management
Kertesz, A., Kacsuk, P., Rodero, I., Guim, F. and Corbalan, J. 2007. Meta-Brokering requirements and research directions in state-of-the-art Grid Resource Management. CoreGRID. https://doi.org/TR-0116

Fault-tolerant behavior in state-of-the-art grid workflow management systems
Plankensteiner, K., Prodan, R., Fahringer, T., Kertesz, A. and Kacsuk, P. 2007. Fault-tolerant behavior in state-of-the-art grid workflow management systems. CoreGRID. https://doi.org/TR-0091

SZTAKI desktop grid: building a scalable, secure platform for desktop grid computing
Marosi, A.C., Gombas, G., Balaton, Z., Kacsuk, P. and Kiss, T. 2007. SZTAKI desktop grid: building a scalable, secure platform for desktop grid computing. CoreGRID. https://doi.org/CoreGRIDTechnicalReportNumberTR-0100

GRID superscalar enabled P-GRADE portal
Lovas, R., Sipos, G., Kacsuk, P., Sirvent, R., Perez, J.M. and Badia, R.M. 2007. GRID superscalar enabled P-GRADE portal. in: Gorlatch, S. and Danelutto, M. (ed.) Integrated research in GRID computing: CoreGRID Integration Workshop 2005 (selected papers), November 28-30, Pisa, Italy Berlin Springer. pp. 241-254

Correctness debugging of message passing programs using model verification techniques
Lovas, R. and Kacsuk, P. 2007. Correctness debugging of message passing programs using model verification techniques. in: Cappello, F., Herault, T. and Dongarra, J. (ed.) Recent advances in parallel virtual machine and message passing interface: 14th European PVM/MPI Users' Group Meeting, Paris, France, September 30 - October 3, 2007: proceedings Berlin Springer.

User oriented grid testing
Kozlovszky, M., Karoczkai, K., Marton, I., Schnautigel, A., Kacsuk, P., Hermann, G., Harrington, R., Martin, D., Winsnes, C. and Strodl, T. 2007. User oriented grid testing. in: Kacsuk, P., Fahringer, T. and Nemeth, Z. (ed.) Distributed and parallel systems: cluster and grid computing (Proceedings of the 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems (DAPSYS)) Boston, MA Springer. pp. 165-175

Utilising different data sources in computational grid workflows
Kiss, T., Tudose, A., Terstyanszky, G., Kacsuk, P. and Sipos, G. 2007. Utilising different data sources in computational grid workflows. CoreGRID Workshop on Grid Programming Model, Grid and P2P Systems Architecture and Grid Systems, Tools and Environments. Heraklion - Crete, Greece 12 - 13 Jun 2007

SRB data resources in computational grid workflows
Kiss, T., Tudose, A., Kacsuk, P. and Terstyanszky, G. 2007. SRB data resources in computational grid workflows. in: Cox, S.J. (ed.) Proceedings of the UK e-Science All Hands Meeting 2007, Nottingham UK, 10th - 13th September Edinburgh National e-Science Centre. pp. 643-650

Brokering multi-grid workflows in the P-GRADE portal
Kertesz, O., Sipos, G. and Kacsuk, P. 2007. Brokering multi-grid workflows in the P-GRADE portal. in: Euro-Par 2006: Parallel Processing: Workshops: CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Dresden, Germany, August 29-September 1, 2006 Berlin, Heidelberg Springer.

Grid meta-broker architecture: towards an interoperable grid resource brokering service
Kertesz, A. and Kacsuk, P. 2007. Grid meta-broker architecture: towards an interoperable grid resource brokering service. in: Talia, D., Yahyapour, R. and Meyer, N. (ed.) Euro-Par 2006: Parallel Processing: Workshops: CoreGRID 2006, UNICORE Summit 2006, Petascale Computational Biology and Bioinformatics, Dresden, Germany, August 29-September 1, 2006 Berlin, Heidelberg Springer.

Grid interoperability by multiple broker utilization and meta-brokering
Kertesz, A., Farkas, Z., Kacsuk, P. and Kiss, T. 2007. Grid interoperability by multiple broker utilization and meta-brokering. in: Proceedings of the 2nd International Workshop on Distributed Cooperative Laboratories: Instrumenting the GRID (INGRID 2007) Austria OCG Verlag. pp. 305-314

Automatic service deployment using virtualisation
Kecskemeti, G., Terstyanszky, G., Kiss, T., Delaitre, T. and Kacsuk, P. 2007. Automatic service deployment using virtualisation. in: Cox, S.J. (ed.) Proceedings of the UK e-Science All Hands Meeting 2007, Nottingham UK, 10th - 13th September Edinburgh National e-Science Centre. pp. 718-725

Simulation of the EMMIL e-marketplace model in see-grid using the P-grade portal
Kacsuk, P., Hermann, G., Balasko, A. and Bruckner, L.K. 2007. Simulation of the EMMIL e-marketplace model in see-grid using the P-grade portal. in: Sklenar, J., Bertelle, C. and Fortino, G. (ed.) Proceedings of the 2007 European Simulation and Modelling Conference, October 22-24, 2007, St. Julian's, Malta, (ESM'2007) Ostend, Belgium EUROSIS. pp. 569-573

Supporting workflow-level parameter study applications by the P-GRADE grid portal
Kacsuk, P., Farkas, Z., Sipos, G., Hermann, G. and Kiss, T. 2007. Supporting workflow-level parameter study applications by the P-GRADE grid portal. in: Priol, T. and Vanneschi, M. (ed.) Towards next generation grids: proceedings of the CoreGRID Symposium 2007, August 27-28, Rennes, France New York, NY, USA Springer. pp. 253-263

Workflow-level parameter study support for production grids
Kacsuk, P., Farkas, Z. and Hermann, G. 2007. Workflow-level parameter study support for production grids. in: Gervasi, O. and Gavrilova, M.L. (ed.) Computational Science and Its Applications - ICCSA 2007: International Conference, Kuala Lumpur, Malaysia, August 26-29, 2007 Berlin, Germany Springer.

Extending the services and sites of production grids by the support of advanced portals
Kacsuk, P. 2007. Extending the services and sites of production grids by the support of advanced portals. in: Daydt, M., Palma, J.M.L.M., Couthino, A.L.G.A., Pacitti, E. and Correia Lopes, J. (ed.) High performance computing for computational science: VECPAR 2006 Berlin, Germany Springer.

Supporting MPI applications in P-GRADE portal
Farkas, Z., Balaton, Z. and Kacsuk, P. 2007. Supporting MPI applications in P-GRADE portal. in: Kacsuk, P., Fahringer, T. and Nemeth, Z. (ed.) Distributed and parallel systems: cluster and grid computing (Proceedings of the 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems (DAPSYS)) Boston, MA Springer. pp. 55-64

Legacy code support for service-oriented production grids
Delaitre, T., Kiss, T., Terstyanszky, G., Winter, S. and Kacsuk, P. 2007. Legacy code support for service-oriented production grids. in: Kacsuk, P., Fahringer, T. and Nemeth, Z. (ed.) Distributed and parallel systems: cluster and grid computing (Proceedings of the 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems (DAPSYS)) Boston, MA Springer. pp. 103-112

SZTAKI desktop grid: a modular and scalable way of building large computing grids
Balaton, Z., Gombas, G., Kacsuk, P., Kornafeld, A., Kovacs, J., Marosi, A.C., Vida, G., Podhorszki, N. and Kiss, T. 2007. SZTAKI desktop grid: a modular and scalable way of building large computing grids. in: 21st International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA Los Alamitos, USA IEEE . pp. 1-8

LCG-2 RB support in the P-GRADE portal
Toth, A. and Kacsuk, P. 2006. LCG-2 RB support in the P-GRADE portal. MIPRO 2006, 29th International Convention. Opatija, Croatia 22-26 May 2006 Croatia Croation Society for Information and Communications.

Legacy code support for commercial production grids
Terstyanszky, G., Kiss, T., Kacsuk, P., Delaitre, T., Kecskemeti, G. and Winter, S. 2006. Legacy code support for commercial production grids. in: Cox, S.J. (ed.) Proceedings of the UK e-Science All Hands Meeting 2006: Nottingham UK, 18th - 21st September Edinburgh, UK National e-Science Centre. pp. 21-26

User support for next generation production grids
Terstyanszky, G., Kiss, T., Delaitre, T., Winter, S., Kacsuk, P. and Kecskemeti, G. 2006. User support for next generation production grids. Grid-Enabling Legacy Applications and Supporting End Users Workshop (GELA) within the framework of the 15th IEEE International Symposium on High Performance Distributed Computing (HPDC'15). Paris, France 19-23 Jun 2006 pp. 35-43

Service-oriented production grids and user support
Terstyanszky, G., Kiss, T., Delaitre, T., Winter, S., Kacsuk, P. and Kecskemeti, G. 2006. Service-oriented production grids and user support. in: Gannon, D., Badia, R.M. and Buyya, R. (ed.) Proceedings of the 7th IEEE/ACM International Conference on Grid Computing, Barcelona, Spain, September 28-29, 2006 Los Alamitos, USA IEEE . pp. 323-324

Hidden access mechanism for demonstrating and teaching grid
Stancheva, R., Terstyanszky, G., Delaitre, T., Kiss, T., Kacsuk, P. and Winter, S. 2006. Hidden access mechanism for demonstrating and teaching grid. MIPRO 2006, 29th International Convention. Opatija, Croatia 22-26 May 2006 Croatia Croation Society for Information and Communications.

Executing parameter study workflows in the P-Grade portal
Sipos, G., Goyeneche, A., Kiss, T. and Kacsuk, P. 2006. Executing parameter study workflows in the P-Grade portal. CoreGRID Workshop on Grid Systems, Tools and Environments in Conjunction with GRIDS@work: CoreGRID Conference, Grid Plugtests and Contest. Sophia-Antipolis, France 01 Dec 2006

Air pollution forecast on the HUNGRID infrastructure
Lovas, R., Patvarczki, J., Kacsuk, P., Lagzi, I., Turnyi, T., Kullman, L., Haszpra, L., Meszaros, R., Horanyi, A. and Bencsura, A. 2006. Air pollution forecast on the HUNGRID infrastructure. in: Parallel Computing: current and future issues of high-end computing John von Neumann Institute for Computing, Central Institute for Applied Mathematics, Forschungszentrum Julich Julich, Germany.

Solving grid interoperability between 2nd and 3rd generation grids by the integrated P-GRADE/GEMCLA portal
Kiss, T., Kacsuk, P., Terstyanszky, G., Delaitre, T., Kecskemeti, G. and Winter, S. 2006. Solving grid interoperability between 2nd and 3rd generation grids by the integrated P-GRADE/GEMCLA portal. in: Cox, S.J. (ed.) Proceedings of the UK e-Science All Hands Meeting 2006: Nottingham UK, 18th - 21st September Edinburgh, UK National e-Science Centre. pp. 389-392

Multi-grid brokering with the P-GRADE portal
Kertesz, A., Sipos, G. and Kacsuk, P. 2006. Multi-grid brokering with the P-GRADE portal. 2nd Austrian Grid Symposium in conjunction with 6th Austrian-Hungarian Workshop on Distributed and Parallel Systems. Innsbruck, Austria 21-23 Sep 2006

A taxonomy of grid resource brokers
Kertesz, A. and Kacsuk, P. 2006. A taxonomy of grid resource brokers. DAPSYS 2006: 6th Austrian-Hungarian Workshop on Distributed Systems in conjunction with the Austrian Grid Symposium 2006. Innsbruck, Austria 21-23 Sep 2006

Multiple broker support by grid portals
Kertesz, A., Farkas, Z., Kacsuk, P. and Kiss, T. 2006. Multiple broker support by grid portals. CoreGRID Workshop on Grid Systems, Tools and Environments in Conjunction with GRIDS@work: CoreGRID Conference, Grid Plugtests and Contest. Sophia-Antipolis, France 01 Dec 2006

Legacy code repository with broker-based job execution
Kecskemeti, G., Terstyanszky, G., Kiss, T. and Kacsuk, P. 2006. Legacy code repository with broker-based job execution. CoreGRID Workshop on Grid Systems, Tools and Environments in Conjunction with GRIDS@work: CoreGRID Conference, Grid Plugtests and Contest. Sophia-Antipolis, France 01 Dec 2006

Defining and running parametric study workflow applications by the P-GRADE portal
Kacsuk, P., Sipos, G., Toth, A., Farkas, Z., Kecskemeti, G. and Hermann, G. 2006. Defining and running parametric study workflow applications by the P-GRADE portal. Cracow '06 Grid Workshop. Krakow, Poland 15-18 Oct 2006

Scalable desktop grid system
Kacsuk, P., Podhorszki, N. and Kiss, T. 2006. Scalable desktop grid system. in: Daydt, M. (ed.) High Performance Computing for Computational Science - VECPAR 2006: 7th international conference, Rio de Janeiro, Brazil, June 10-13, 2006: revised selected and invited papers Berlin, Germany Springer. pp. 27-38

SZTAKI desktop grid: a hierarchical desktop grid system
Kacsuk, P., Marosi, A.C., Kovacs, J., Balaton, Z., Gombas, G., Vida, G. and Kornafeld, A. 2006. SZTAKI desktop grid: a hierarchical desktop grid system. Cracow '06 Grid Workshop. Krakow, Poland 15-18 Oct 2006

Solving the grid interoperability problem by P-GRADE portal at workflow level
Kacsuk, P., Kiss, T. and Sipos, G. 2006. Solving the grid interoperability problem by P-GRADE portal at workflow level. Grid-Enabling Legacy Applications and Supporting End Users Workshop (GELA) within the framework of the 15th IEEE International Symposium on High Performance Distributed Computing (HPDC'15). Paris, France 19-23 Jun 2006

User friendly environment to grid enabled legacy codes
Kacsuk, P., Kiss, T., Delaitre, T., Goyeneche, A., Winter, S., Terstyanszky, G., Farkas, Z., Nemeth, C. and Boczko, T. 2006. User friendly environment to grid enabled legacy codes. in: Di Martino, B., Dongarra, J., Hoisie, A., Yang, L.T. and Zima, H. (ed.) Engineering the grid: status and perspective Valencia, California, USA ASP Press. pp. 205-217

Workflow-level parameter study management in multi-grid environments by the P-GRADE portal
Kacsuk, P., Farkas, Z., Sipos, G., Toth, A. and Hermann, G. 2006. Workflow-level parameter study management in multi-grid environments by the P-GRADE portal. GCE06 - Grid Computing Environments 2006 in conjunction with SC06. Tampa, USA 11-17 Nov 2006

Grid interoperability by P-GRADE grid portal
Kacsuk, P. 2006. Grid interoperability by P-GRADE grid portal. International Workshop on Performance Analysis and Optimization of High-End Computing Systems in conjunction with SC06. Tampa, USA 11-17 Nov 2006

Dynamic testing of legacy code resources on the grid
Bitonti, L., Kiss, T., Terstyanszky, G., Delaitre, T., Winter, S. and Kacsuk, P. 2006. Dynamic testing of legacy code resources on the grid. in: Proceedings of the 3rd Conference on Computing Frontiers New York, USA ACM. pp. 261-268

Multi-grid, multi-user workflows in the P-GRADE grid portal
Kacsuk, P. and Sipos, G. 2005. Multi-grid, multi-user workflows in the P-GRADE grid portal. Journal of Grid Computing. 3 (3-4), pp. 221-238. https://doi.org/10.1007/s10723-005-9012-6

Legacy code support for production grids
Kiss, T., Terstyanszky, G., Kecskemeti, G., Illes, S., Delaitre, T., Winter, S., Kacsuk, P. and Sipos, G. 2005. Legacy code support for production grids. CoreGRID. https://doi.org/CoreGRIDTechnicalReportNumberTR-0011

Scalable desktop grid system
Kacsuk, P., Podhorszki, N. and Kiss, T. 2005. Scalable desktop grid system. CoreGRID. https://doi.org/CoreGRIDTechnicalReportNumberTR-0006

Deployment and interoperability of legacy code services
Zetuny, Y., Kecskemeti, G., Kiss, T., Sipos, G., Kacsuk, P., Terstyanszky, G. and Winter, S. 2005. Deployment and interoperability of legacy code services. in: Gorlatch, S. and Danelutto, M. (ed.) Proceedings of the CoreGRID Integration Workshop, Pisa, Italy Pisa, Italy Universit di Pisa, Dipartimento di Informatica.

Security mechanisms for legacy code applications in GT3 environment
Terstyanszky, G., Delaitre, T., Goyeneche, A., Kiss, T., Sajadah, K., Winter, S. and Kacsuk, P. 2005. Security mechanisms for legacy code applications in GT3 environment. in: 13th Euromicro Conference on Parallel, Distributed, and Network-Based Processing proceedings: Lugano, Switzerland, February 9-11, 2005 Los Alamitos, USA IEEE . pp. 220-226

Executing workflow-based grid applications with the collaborative P-GRADE portal
Sipos, G., Nemeth, C., Lewis, G.J., Alexandrov, V.N. and Kacsuk, P. 2005. Executing workflow-based grid applications with the collaborative P-GRADE portal. in: Cox, S.J. and Walker, D.W. (ed.) Proceedings UK e-Science All Hands Meeting 2005, Steering via the Image in Local, Distributed and Collaborative Settings Swindon, UK EPSRC.

Workflow-oriented collaborative grid portals
Sipos, G., Lewis, G.J., Kacsuk, P. and Alexandrov, V.N. 2005. Workflow-oriented collaborative grid portals. in: Sloot, P.M.A., Hoekstra, A.G., Priol, T., Reinefeld, A. and Bubak, M. (ed.) Advances in grid computing: EGC 2005 : European Grid Conference Amsterdam, The Netherlands, February 14-16, 2005: revised selected papers Berlin, Germany Springer.

Collaborative workflow editing in the P-Grade portal
Sipos, G. and Kacsuk, P. 2005. Collaborative workflow editing in the P-Grade portal. in: microCAD 2005 International Scientific Conference Miskolc, Hungary microCAD. pp. 353-358

Portal in the SEE-GRID
Patvarczki, J., Farkas, Z., Morosi, A., Nemeth, C. and Kacsuk, P. 2005. Portal in the SEE-GRID. in: MIPRO 2005: proceedings of the 28th international convention Rijeka, Croatia Studio Hofbauer. pp. 195-199

Legacy code support for production grids
Kiss, T., Terstyanszky, G., Kecskemeti, G., Illes, S., Delaitre, T., Winter, S., Kacsuk, P. and Sipos, G. 2005. Legacy code support for production grids. in: Proceedings of the 6th IEEE/ACM International Workshop on Grid Computing: November 13-14 2005. Seattle, Washington, USA USA IEEE . pp. 278-283

Integration of GEMLCA and the P-GRADE portal
Kiss, T., Sipos, G., Kacsuk, P., Karoczkai, K., Terstyanszky, G. and Delaitre, T. 2005. Integration of GEMLCA and the P-GRADE portal. CoreGRID Workshop on Grid Systems, Tools and Environments (WP7 Workshop) (in conjunction with GRIDS@Work). Sophia Antipolis, France 12-14 Oct 2005

Automatic deployment and interoperability of grid services
Kecskemeti, G., Zetuny, Y., Terstyanszky, G., Winter, S., Kiss, T. and Kacsuk, P. 2005. Automatic deployment and interoperability of grid services. in: Cox, S.J. and Walker, D.W. (ed.) Proceedings UK e-Science All Hands Meeting 2005, Steering via the Image in Local, Distributed and Collaborative Settings Swindon, UK EPSRC. pp. 729-736

Automatic deployment of interoperable legacy code services
Kecskemeti, G., Zetuny, Y., Kiss, T., Sipos, G., Kacsuk, P., Terstyanszky, G. and Winter, S. 2005. Automatic deployment of interoperable legacy code services. CoreGRID Workshop on Grid Systems, Tools and Environments (WP7 Workshop) (in conjunction with GRIDS@Work). Sophia Antipolis, France 12-14 Oct 2005

Experiences with deploying legacy code applications as grid services using GEMLCA
Goyeneche, A., Kiss, T., Terstyanszky, G., Kecskemeti, G., Delaitre, T., Kacsuk, P. and Winter, S. 2005. Experiences with deploying legacy code applications as grid services using GEMLCA. in: Sloot, P.M.A., Hoekstra, A.G., Priol, T. and Reinefeld, A. (ed.) Advances in grid computing (EGC 2005): European Grid Conference, Amsterdam, The Netherlands, February 14-16, 2005: revised selected papers Berlin, Germany Springer. pp. 851-860

GEMLCA: running legacy code applications as grid services
Delaitre, T., Kiss, T., Goyeneche, A., Terstyanszky, G., Winter, S. and Kacsuk, P. 2005. GEMLCA: running legacy code applications as grid services. CoreGRID. https://doi.org/TR0004

Connecting the P-GRADE portal with the MDS-2 Grid Information System
Boczko, T., Patvarczki, J. and Kacsuk, P. 2005. Connecting the P-GRADE portal with the MDS-2 Grid Information System. in: microCAD 2005 International Scientific Conference Miskolc, Hungary microCAD.

Towards integration of legacy code deployment approaches
Balis, B., Bubak, M., Harrison, A., Kacsuk, P., Kiss, T., Sipos, G. and Taylor, I. 2005. Towards integration of legacy code deployment approaches. in: Gorlatch, S. and Danelutto, M. (ed.) Proceedings of the CoreGRID Integration Workshop, Pisa, Italy Pisa, Italy Universit di Pisa, Dipartimento di Informatica.

GEMLCA: running legacy code applications as grid services
Delaitre, T., Kiss, T., Goyeneche, A., Terstyanszky, G., Winter, S. and Kacsuk, P. 2005. GEMLCA: running legacy code applications as grid services. Journal of Grid Computing. 3 (1-2), pp. 75-90. https://doi.org/10.1007/s10723-005-9002-8

A migration framework for executing parallel programs in the grid
Kovacs, J. and Kacsuk, P. 2004. A migration framework for executing parallel programs in the grid. in: Dikaiakos, M.D. (ed.) Grid Computing: Second European AcrossGrids Conference, AxGrids 2004, Nicosia, Cyprus, January 28-30, 2004: revised papers Berlin, Germany Springer.

Deploying application on a GT3 Grid
Kiss, T., Delaitre, T., Goyeneche, A., Winter, S., Kacsuk, P., Terstyanszky, G., Igbe, D., Maselino, P., Sajadah, K. and Weingarten, N. 2004. Deploying application on a GT3 Grid. London, UK University of Westminster.

High-level grid application environment to use legacy codes as OGSA grid services
Kacsuk, P., Goyeneche, A., Delaitre, T., Kiss, T., Farkas, Z. and Boczko, T. 2004. High-level grid application environment to use legacy codes as OGSA grid services. in: Buyya, R. (ed.) Fifth IEEE/ACM International Workshop on Grid Computing: Pittsburgh, Pennsylvania, 8 November, 2004 Las Alamitos, USA IEEE . pp. 428-435

A high-level grid application environment to grid-enable legacy code
Kacsuk, P., Farkas, Z., Boczko, T., Kiss, T., Goyeneche, A. and Delaitre, T. 2004. A high-level grid application environment to grid-enable legacy code. ERCIM News. 59, pp. 44-45.

Creating scalable traffic simulation on clusters
Gourgoulis, A., Terstyanszky, G., Kacsuk, P. and Winter, S. 2004. Creating scalable traffic simulation on clusters. in: Proceedings of the 12th Euromicro Conference on Parallel, Distributed and Network-Based Processing (PDP 2004) Los Alamitos, USA IEEE . pp. 60-65

Experiences with publishing and executing parallel legacy code using an OGSI grid service
Delaitre, T., Goyeneche, A., Kiss, T., Terstyanszky, G., Winter, S., Kacsuk, P., Igbe, D., Maselino, P., Sajadah, K. and Weingarten, N. 2004. Experiences with publishing and executing parallel legacy code using an OGSI grid service. in: Proceedings of the UK E-Science All Hands Meeting, 31st Aug - 3rd Sep, 2004, Nottingham, UK EPSRC. pp. 999-1002

GEMLCA: grid execution management for legacy code architecture design
Delaitre, T., Goyeneche, A., Kacsuk, P., Kiss, T., Terstyanszky, G. and Winter, S. 2004. GEMLCA: grid execution management for legacy code architecture design. in: Steinmetz, R., Mauthe, A. and Crnkovic, I. (ed.) 30th Euromicro Conference proceedings: 31 August-3 September, 2004, Rennes, France IEEE . pp. 477-483

P-GRADE: a grid programming environment
Kacsuk, P., Dozsa, G., Kovacs, J., Lovas, R., Podhorszki, N., Balaton, Z. and Gombas, G. 2003. P-GRADE: a grid programming environment. Journal of Grid Computing. 1 (2), pp. 171-197. https://doi.org/10.1023/B:GRID.0000024073.65405.63

Demonstration of P-GRADE job-mode for the Grid
Kacsuk, P., Lovas, R., Kovacs, J., Gombas, G., Podhorszki, N., Ovath, A.H., Horanyi, A., Szeberenyi, T., Delaitre, T. and Terstyanszky, G. 2003. Demonstration of P-GRADE job-mode for the Grid. in: Kosch, H. and Boszormenyi, L. (ed.) Euro-Par 2003 Parallel Processing: 9th International Euro-Par Conference Klagenfurt, Austria, August 26-29, 2003 Proceedings Berlin, Germany Springer. pp. 1281-1286

Using clusters for traffic simulation
Gourgoulis, A., Terstyanszky, G., Kacsuk, P. and Winter, S. 2003. Using clusters for traffic simulation. in: MIPRO 2003: 26th International Convention on Hypermedia and Grid Systems, Opatija, Croatia, May 19-23, 2003 Liniavera. pp. 123-128

Urban traffic simulation based on cluster computing
Gourgoulis, A., Terstyanszky, G., Kacsuk, P. and Winter, S. 2003. Urban traffic simulation based on cluster computing. microCAD 2003. Miskolc, Hungary 06-07 Mar 2003

Simulation of urban transport based on cluster computing
Gourgoulis, A., Terstyanszky, G., Kacsuk, P. and Winter, S. 2003. Simulation of urban transport based on cluster computing. in: Al-Dabass, D. (ed.) UKSIM 2003: Sixth National Conference of the United Kingdom Simulation Society, Emmanuel College, Cambridge: 9th - 11th April 2003 United Kingdom Simulation Society. pp. 220-224

A distributed approach for intelligent reconfiguration of wireless mobile networks
Madani, K., Karran, T., Ribeiro-Justo, G.R., Lohi, M., Lund, I., Martin, I., Honary, B., Imre, S., Rabai, G., Kovacs, J., Kacsuk, P., Lanyi, A., Gritzner, T. and Forster, M. 2002. A distributed approach for intelligent reconfiguration of wireless mobile networks. IST Mobile & Wireless Telecommunications Summit 2002. Thessalonica, Greece 16-19 Jun 2002

Semi-on-line monitoring of P-GRADE applications
Podhorszki, N. and Kacsuk, P. 2001. Semi-on-line monitoring of P-GRADE applications. Parallel and Distributed Computing Practices. 4 (4), pp. 43-60.

Enabling technologies for the CAST intelligent reconfigurable mobile radio network
Madani, K., Ramos, R.E., Lohi, M., Justo, G., Karran, T., Imre, S., Kovacs, J., Kacsuk, P., Lund, D., Honary, B., Forster, M., Gritzner, T. and Patel, S. 2001. Enabling technologies for the CAST intelligent reconfigurable mobile radio network. IST Mobile Summit 2001. Barcelona, Spain 09-12 Sep 2001

Parallel program development for cluster computing: methodology, tools and integrated environments
Cunha, J.C., Kacsuk, P. and Winter, S. 2001. Parallel program development for cluster computing: methodology, tools and integrated environments. Huntingdon, UK Nova Science Publishers.

Panel on Metacomputing
Getov, Vladimir, Kacsuk, P., Kesselman, C., Kloeckner, K., Laforenza, D. and Vajda, F. 2000. Panel on Metacomputing. in: Proceedings: 8th Euromicro Workshop on Parallel and Distributed Processing, January 19-21, 2000 IEEE . pp. 254

Case studies in performance modelling and simulation of client/server systems
Delaitre, T., Poslad, S., Winter, S. and Kacsuk, P. 1997. Case studies in performance modelling and simulation of client/server systems. in: Koutvasos, D. (ed.) Proceedings of the 13th UK Workshop on Performance Engineering for Computer and Telecommunication Systems (UKPEW'97), Ilkley, West Yorkshire, UK, 24th July 1997 British Computer Society Performance Specialist Group. pp. 22/1-22/9

Software engineering for parallel processing
Winter, S. and Kacsuk, P. 1994. Software engineering for parallel processing. in: Proceedings of the IEE Colloquium on High Performance Computing for Advanced Control, Savoy Place, London, 08 December 1994 IEEE .

Software engineering for parallel processing
Winter, S. and Kacsuk, P. 1994. Software engineering for parallel processing. in: Pataricza, A., Selényi, E. and Somogyi, A. (ed.) Proceedings of the 8th Symposium on Microcomputer and Microprocessor Applications, Budapest, 12 - 14 October 1994 Technical University. pp. 285-293

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