Essential role of proline synthesis and the one-carbon metabolism pathways for systemic virulence of Streptococcus pneumoniae

Ramos-Sevillano, Elisa, Ercoli, Giuseppe, Betts, Modupeh, Guerra-Assunção, José Afonso, Iverson, Amy, Frank, Matthew, Partridge, Frederick, Lo, Stephanie W., Fernandes, Vitor E., Nasher, Fauzy, Wall, Emma, Wren, Brendan, Gordon, Stephen B., Ferreira, Daniela M., Heyderman, Rob, Rosch, Jason and Brown, Jeremy S. 2024. Essential role of proline synthesis and the one-carbon metabolism pathways for systemic virulence of Streptococcus pneumoniae. mBio. 15 (11), pp. e01758-24. https://doi.org/10.1128/mbio.01758-24

TitleEssential role of proline synthesis and the one-carbon metabolism pathways for systemic virulence of Streptococcus pneumoniae
TypeJournal article
AuthorsRamos-Sevillano, Elisa, Ercoli, Giuseppe, Betts, Modupeh, Guerra-Assunção, José Afonso, Iverson, Amy, Frank, Matthew, Partridge, Frederick, Lo, Stephanie W., Fernandes, Vitor E., Nasher, Fauzy, Wall, Emma, Wren, Brendan, Gordon, Stephen B., Ferreira, Daniela M., Heyderman, Rob, Rosch, Jason and Brown, Jeremy S.
AbstractVirulence screens have indicated potential roles during Streptococcus pneumoniae infection for the one-carbon metabolism pathway component Fhs and proline synthesis mediated by ProABC. To define how these metabolic pathways affect S. pneumoniae virulence, we have investigated the phenotypes, transcription, and metabolic profiles of Δ fhs and Δ proABC mutants. S. pneumoniae capsular serotype 6B BHN418 Δ fhs and Δ proABC mutant strains had strongly reduced virulence in mouse sepsis and pneumonia models but could colonize the nasopharynx. Both mutant strains grew normally in complete media but had markedly impaired growth in chemically defined medium, human serum, and human cerebrospinal fluid. The BHN418 Δ proABC strain also had impaired growth under conditions of osmotic and oxidative stress. The virulence role of proABC was strain specific, as the D39 Δ proABC strain could still cause septicemia and grow in serum. Compared to culture in broth, in serum, the BHN418 Δ fhs and Δ proABC strains showed considerable derangement in global gene transcription that affected multiple but different metabolic pathways for each mutant strain. Metabolic data suggested that Δ fhs had an impaired stringent response, and when cultured in sera, BHN418 Δ fhs and Δ proABC were under increased oxidative stress and had altered lipid profiles. Loss of proABC also affected carbohydrate metabolism and the accumulation of peptidoglycan synthesis precursors in the BHN418 but not the D39 background, linking this phenotype to the conditional virulence phenotype. These data identify the S. pneumoniae metabolic functions affected by S. pneumoniae one-carbon metabolism and proline biosynthesis, and the role of these genetic loci for establishing systemic infection. IMPORTANCE Rapid adaptation to grow within the physiological conditions found in the host environment is an essential but poorly understood virulence requirement for systemic pathogens such as Streptococcus pneumoniae . We have now demonstrated an essential role for the one-carbon metabolism pathway and a conditional role depending on strain background for proline biosynthesis for S. pneumoniae growth in serum or cerebrospinal fluid, and therefore for systemic virulence. RNAseq and metabolomic data demonstrated that the loss of one-carbon metabolism or proline biosynthesis has profound but differing effects on S. pneumoniae metabolism in human serum, identifying the metabolic processes dependent on each pathway during systemic infection. These data provide a more detailed understanding of the adaptations required by systemic bacterial pathogens in order to cause infection and demonstrate that the requirement for some of these adaptations varies between strains from the same species and could therefore underpin strain variations in virulence potential.
JournalmBio
Journal citation15 (11), pp. e01758-24
ISSN2150-7511
Year2024
PublisherAmerican Society for Microbiology
Publisher's version
License
CC BY 4.0
File Access Level
Open (open metadata and files)
Digital Object Identifier (DOI)https://doi.org/10.1128/mbio.01758-24
PubMed ID39422467
Publication dates
Published online18 Oct 2024
Published in printNov 2024
ProjectR/N02687X/1
MR/R015651/1
FunderUKRI | Medical Research Council
UKRI | Medical Research Council
NIHR | University College London Hospitals Biomedical Research Centre

Related outputs

A drug repurposing screen for whipworms informed by comparative genomics.
Coghlan A., Partridge, F.A., Duque-Correa M.A., Rinaldi, G., Clare, S., Seymour, L., Brandt, C., Mkandawire, T.T., McCarthy, C., Holroyd, N., Nick, M., Brown, A.E. and Berriman, M. 2023. A drug repurposing screen for whipworms informed by comparative genomics. PLoS Neglected Tropical Diseases. 17 (9) e0011205. https://doi.org/10.1371/journal.pntd.0011205

Preprint: Essential role of proline synthesis and the one-carbon metabolism pathways for systemic virulence of Streptococcus pneumoniae
Ramos-Sevillano, E., Ercoli, G., Guerra-Assunção, J.A., Betts, M., Partridge, F., Fernandes, V.E., Wall, E., Gordon, S.B., Ferreira, D.M., Heyderman, R. and Brown, J.S. 2023. Preprint: Essential role of proline synthesis and the one-carbon metabolism pathways for systemic virulence of Streptococcus pneumoniae. biorxiv.org. https://doi.org/10.1101/2023.08.03.550501

Preprint: A drug repurposing screen for whipworms informed by comparative genomics
Avril Coghlan, Frederick A. Partridge, María Adelaida Duque-Correa, Gabriel Rinaldi, Simon Clare, Lisa Seymour, Cordelia Brandt, Tapoka T. Mkandawire, Catherine McCarthy, Nancy Holroyd, Marina Nick, Anwen E. Brown, Sirapat Tonitiwong, David B. Sattelle and Matthew Berriman 2023. Preprint: A drug repurposing screen for whipworms informed by comparative genomics. biorxiv.org. https://doi.org/10.1101/2023.03.02.530747

Screening the Medicines for Malaria Venture (MMV) Pandemic Response Box chemical library on Caenorhabditis elegans identifies re-profiled candidate anthelmintic drug leads
Nick, M., Partridge, F., Forman, R., Bataille, C.J.R., Else, K.J., Russell, A.J. and Sattelle, D.B. 2022. Screening the Medicines for Malaria Venture (MMV) Pandemic Response Box chemical library on Caenorhabditis elegans identifies re-profiled candidate anthelmintic drug leads. Frontiers in Tropical Diseases. 3 1017900. https://doi.org/10.3389/fitd.2022.1017900

Preprint: Screening the Medicines for Malaria Pandemic Response Box chemical library on Caenorhabditis elegans identifies re-profiled candidate anthelmintic drug leads
Nick, M., Partridge, F.A., Forman, R., Bataille, C.J.R., Else, K.J., Russell, A.J. and Sattelle, D.B. 2022. Preprint: Screening the Medicines for Malaria Pandemic Response Box chemical library on Caenorhabditis elegans identifies re-profiled candidate anthelmintic drug leads. biorxiv.org. https://doi.org/10.1101/2022.08.10.503491

Automated phenotyping of mosquito larvae enables high-throughput screening for novel larvicides and offers potential for smartphone-based detection of larval insecticide resistance
Buckingham, S.D., Partridge, F.A., Poulton, B.C., S. Miller, B.S., McKendry, R.A., Lycett, G.J. and Sattelle, D.B. 2021. Automated phenotyping of mosquito larvae enables high-throughput screening for novel larvicides and offers potential for smartphone-based detection of larval insecticide resistance. PLoS Neglected Tropical Diseases. 15 (6) e0008639. https://doi.org/10.1371/journal.pntd.0008639

Structural Requirements for Dihydrobenzoxazepinone Anthelmintics: Actions against Medically Important and Model Parasites: Trichuris muris, Brugia malayi, Heligmosomoides polygyrus, and Schistosoma mansoni
Partridge, F.A., Bataille, C.J.R., Forman, R., Marriott, A.E., Forde-Thomas, J., Häberli, C., Dinsdale, R.L., O’Sullivan, J.D.B., Willis, N.J., Wynne, G.M., Whiteland, H., Archer, J., Steven, A., Keiser, J., Turner, J.D., Hoffmann, K.F., Taylor, M.J., Else, K.J., Russell, A.J. and Sattelle, D.B. 2021. Structural Requirements for Dihydrobenzoxazepinone Anthelmintics: Actions against Medically Important and Model Parasites: Trichuris muris, Brugia malayi, Heligmosomoides polygyrus, and Schistosoma mansoni. ACS Infectious Diseases. 7 (5), pp. 1260-1274. https://doi.org/10.1021/acsinfecdis.1c00025

Preprint: Actions of camptothecin derivatives on larvae and adults of the arboviral vector Aedes aegypti
Partridge, F.A., Poulton, B.C., Lake, M.A.I., Lees, R.A., Mann, H-J., Lycett, G.J. and Sattelle, D.B. 2021. Preprint: Actions of camptothecin derivatives on larvae and adults of the arboviral vector Aedes aegypti. biorxiv.org. https://doi.org/10.1101/2021.09.06.458863

Preprint: Structural requirements for dihydrobenzoxazepinone anthelmintics: actions against medically important and model parasites - Trichuris muris, Brugia malayi, Heligmosomoides polygyrus and Schistosoma mansoni
Partridge, F.A., Bataille, C.J.R., Forman, R., Marriott, A.E., Forde-Thomas, J., Cécile Häberli, C., Dinsdale, R.L., O’Sullivan, J.D.B., Willis, N.J., Wynne, G.M., Whiteland, H., Archer, J., Steven, A., Keiser, J., Turner, J.D., Hoffmann, K.F., Taylor, M.J., Else, K.J., Russell, A.J. and Sattelle, D.B. 2021. Preprint: Structural requirements for dihydrobenzoxazepinone anthelmintics: actions against medically important and model parasites - Trichuris muris, Brugia malayi, Heligmosomoides polygyrus and Schistosoma mansoni. biorxiv.org. https://doi.org/10.1101/2020.11.17.384933

Preprint: Automated phenotyping of mosquito larvae enables high-throughput screening for novel larvicides and offers potential for smartphone-based detection of larval insecticide resistance
Buckingham, S.D., Partridge, F.A., Poulton, B.C., Miller, B., McKendry, R.A., Lycett, G.J. and Sattelle, D.B. 2021. Preprint: Automated phenotyping of mosquito larvae enables high-throughput screening for novel larvicides and offers potential for smartphone-based detection of larval insecticide resistance. biorxiv.org. https://doi.org/10.1101/2020.07.20.211946

Actions of Camptothecin Derivatives on Larvae and Adults of the Arboviral Vector Aedes aegypti
Partridge, F.A., Poulton, B., Lake, M.A.I., Lees, R.A., Mann, H-J., Lycett, G. and Sattelle, D.B. 2021. Actions of Camptothecin Derivatives on Larvae and Adults of the Arboviral Vector Aedes aegypti. Molecules. 26 (20) 6226. https://doi.org/10.3390/molecules26206226

Anthelmintic drug discovery: target identification, screening methods and the role of open science
Partridge, F.A., Forman, R., Bataille, C.J.R., Wynne, G.M., Nick, M., Russell, A.J., Else, K.J. and Sattelle, D.B. 2020. Anthelmintic drug discovery: target identification, screening methods and the role of open science. Beilstein Journal of Organic Chemistry. 16, pp. 1203-1224. https://doi.org/10.3762/bjoc.16.105

C. elegans expressing D76N β2-microglobulin: a model for in vivo screening of drug candidates targeting amyloidosis
Faravelli, G., Raimondi, S., Marchese, L., Partridge, F.A., Soria, C., Mangione, P.P., Canetti, D., Perni, M., Aprile, F.A., Zorzoli, I., Di Schiavi, E., Lomas, D.A., Bellotti, V., Sattelle, D.B. and Giorgetti, S. 2019. C. elegans expressing D76N β2-microglobulin: a model for in vivo screening of drug candidates targeting amyloidosis. Scientific Reports. 9 19960. https://doi.org/10.1038/s41598-019-56498-5

Improved reference genome of Aedes aegypti informs arbovirus vector control.
Matthews, B.J., Dudchenko, O., Kingan, S.B., Koren, S., Antoshechkin, I., Crawford, J.E., Glassford, W.J., Herre, M., Redmond, S.N., Rose, N.H., Weedall, G.D., Wu, Y., Batra, S.S., Vosshall, L.B. and Partridge, F. 2018. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. 563, pp. 501-507. https://doi.org/10.1038/s41586-018-0692-z

The fungal alkaloid Okaramine-B activates an L-glutamate-gated chloride channel from Ixodes scapularis, a tick vector of Lyme disease
Furutani, S., Ihara, M., Lees, K., Buckingham, S.D., Partridge, F.A., David, J.A., Patel, R., Warchal, S., Mellor, I.R., Matsuda, K. and Sattelle, D.B. 2018. The fungal alkaloid Okaramine-B activates an L-glutamate-gated chloride channel from Ixodes scapularis, a tick vector of Lyme disease. International Journal for Parasitology: Drugs and Drug Resistance. 8 (2), pp. 350-360. https://doi.org/10.1016/j.ijpddr.2018.06.001

2,4-Diaminothieno[3,2-d]pyrimidines, a new class of anthelmintic with activity against adult and egg stages of whipworm
Partridge, F.A., Forman, R., Willis, N.J., Bataille, C.J.R., Murphy, E.A., Brown, A.E., Heyer-Chauhan, N., Bruno Marinič, B., Sowood, D.J.C., Wynne, G.M., Else, K.J., Russell, A.J. and Sattelle, D.B. 2018. 2,4-Diaminothieno[3,2-d]pyrimidines, a new class of anthelmintic with activity against adult and egg stages of whipworm. PLoS Neglected Tropical Diseases. 12 (7) e0006487. https://doi.org/10.1371/journal.pntd.0006487

Preprint: 2,4-Diaminothieno[3,2-d]pyrimidines, a new class of anthelmintic with activity against adult and egg stages of whipworm
Partridge, F.A., Forman, R., Willis, N.J., Bataille, C.J.R., Murphy, E.A., Brown, A.E., Heyer-Chauhan, N., Bruno Marinič, B., Sowood, D.J.C., Wynne, G.M., Else, K.J., Russell, A.J. and Sattelle, D.B. 2018. Preprint: 2,4-Diaminothieno[3,2-d]pyrimidines, a new class of anthelmintic with activity against adult and egg stages of whipworm. biorxiv.org. https://doi.org/10.1101/254037

An automated high-throughput system for phenotypic screening of chemical libraries on C. elegans and parasitic nematodes
Partridge, F.A., Brown, A.E., Buckingham, S.D., Willis, N.J., Wynne, G.M., Forman, R., Else, K.J., Morrison, A.A., Matthews, J.B., Russell, A.J., Lomas, D.A. and Sattelle, D.B. 2018. An automated high-throughput system for phenotypic screening of chemical libraries on C. elegans and parasitic nematodes. International Journal for Parasitology: Drugs and Drug Resistance. 8 (1), pp. 8-21. https://doi.org/10.1016/j.ijpddr.2017.11.004

Dihydrobenz[e][1,4]oxazepin-2(3H)-ones, a new anthelmintic chemotype immobilising whipworm and reducing infectivity in vivo.
Partridge, F.A., Murphy, E.A., Willis, N.J., Bataille, C.J., Forman, R., Heyer-Chauhan, N., Marinič, B., Sowood, D.J., Wynne, G.M., Else, K.J., Russell, A.J. and Sattelle, D.B. 2017. Dihydrobenz[e][1,4]oxazepin-2(3H)-ones, a new anthelmintic chemotype immobilising whipworm and reducing infectivity in vivo. PLoS Neglected Tropical Diseases. 11 (2) e0005359. https://doi.org/10.1371/journal.pntd.0005359

Preprint: Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
Matthews, B.J., Dudchenko, O., Kingan, S., Koren, S., Antoshechkin, I., Crawford, J.E., Glassford, W.J., Herre, M., Redmond, S.N., Rose, N.H., Weedall, G.D., Wu, Y., Batra, S.S., Vosshall, L.B. and Partridge, F. 2017. Preprint: Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control. https://doi.org/10.1101/240747

Preprint: An automated high-throughput system for phenotypic screening of chemical libraries on C. elegans and parasitic nematodes
Partridge, F.A., Brown, A.E., Buckingham, S.D., Willis, N.J., Wynne, G.M., Forman, R., Else, K.J., Morrison, A.A., Matthews, J.B., Russell, A.J., Lomas, D.A. and Sattelle, D.B. 2017. Preprint: An automated high-throughput system for phenotypic screening of chemical libraries on C. elegans and parasitic nematodes. biorxiv.org. https://doi.org/10.1101/187427

Automated, high-throughput, motility analysis in Caenorhabditis elegans and parasitic nematodes: Applications in the search for new anthelmintics
Buckingham, S.D., Partridge, F.A. and Sattelle, D.B. 2014. Automated, high-throughput, motility analysis in Caenorhabditis elegans and parasitic nematodes: Applications in the search for new anthelmintics. International Journal for Parasitology: Drugs and Drug Resistance. 4 (3), pp. 226-232. https://doi.org/10.1016/j.ijpddr.2014.10.004

An antagonist of the retinoid X receptor reduces the viability of Trichuris muris in vitro.
Hurst, R.J., Hopwood, T., Gallagher, A.L., Partridge, F.A., Burgis, T., Sattelle, D.B. and Else, K.J. 2014. An antagonist of the retinoid X receptor reduces the viability of Trichuris muris in vitro. BMC Infectious Diseases. https://doi.org/10.1186/1471-2334-14-520

Serotonergic chemosensory neurons modify the C. elegans immune response by regulating G-protein signaling in epithelial cells.
Anderson, A., Laurenson-Schafer, H., Partridge, F.A., Hodgkin, J. and McMullan, R. 2013. Serotonergic chemosensory neurons modify the C. elegans immune response by regulating G-protein signaling in epithelial cells. PLOS Pathogens. 9 (12) e1003787. https://doi.org/10.1371/journal.ppat.1003787

Signal transduction pathways that function in both development and innate immunity.
Partridge, F.A., Gravato-Nobre, M.J. and Hodgkin, J. 2010. Signal transduction pathways that function in both development and innate immunity. Developmental Dynamics. 239 (5), pp. 1330-1336. https://doi.org/10.1002/dvdy.22232

The C. elegans glycosyltransferase BUS-8 has two distinct and essential roles in epidermal morphogenesis.
Partridge, F.A., Tearle, A.W., Gravato-Nobre, M.J., Schafer, W.R. and Hodgkin, J. 2008. The C. elegans glycosyltransferase BUS-8 has two distinct and essential roles in epidermal morphogenesis. Developmental Biology. 317 (2), pp. 549-559. https://doi.org/10.1016/j.ydbio.2008.02.060

Caenorhabditis elegans meets microsporidia: the nematode killers from Paris.
Hodgkin, J. and Partridge, F.A. 2008. Caenorhabditis elegans meets microsporidia: the nematode killers from Paris. PLOS Biology. 6 (12) e1000005. https://doi.org/10.1371/journal.pbio.1000005

Permalink - https://westminsterresearch.westminster.ac.uk/item/wx5z0/essential-role-of-proline-synthesis-and-the-one-carbon-metabolism-pathways-for-systemic-virulence-of-streptococcus-pneumoniae


Share this

Usage statistics

9 total views
3 total downloads
These values cover views and downloads from WestminsterResearch and are for the period from September 2nd 2018, when this repository was created.