A systematic review of the applications of Expert Systems (ES) and machine learning (ML) in clinical urology.

Salem, H., Soria, D., Lund, J. and Awwad, A. 2021. A systematic review of the applications of Expert Systems (ES) and machine learning (ML) in clinical urology. BMC Medical Informatics and Decision Making. 21 (1) 223. https://doi.org/10.1186/s12911-021-01585-9

TitleA systematic review of the applications of Expert Systems (ES) and machine learning (ML) in clinical urology.
TypeJournal article
AuthorsSalem, H., Soria, D., Lund, J. and Awwad, A.
Abstract<h4>Background</h4>Testing a hypothesis for 'factors-outcome effect' is a common quest, but standard statistical regression analysis tools are rendered ineffective by data contaminated with too many noisy variables. Expert Systems (ES) can provide an alternative methodology in analysing data to identify variables with the highest correlation to the outcome. By applying their effective machine learning (ML) abilities, significant research time and costs can be saved. The study aims to systematically review the applications of ES in urological research and their methodological models for effective multi-variate analysis. Their domains, development and validity will be identified.<h4>Methods</h4>The PRISMA methodology was applied to formulate an effective method for data gathering and analysis. This study search included seven most relevant information sources: WEB OF SCIENCE, EMBASE, BIOSIS CITATION INDEX, SCOPUS, PUBMED, Google Scholar and MEDLINE. Eligible articles were included if they applied one of the known ML models for a clear urological research question involving multivariate analysis. Only articles with pertinent research methods in ES models were included. The analysed data included the system model, applications, input/output variables, target user, validation, and outcomes. Both ML models and the variable analysis were comparatively reported for each system.<h4>Results</h4>The search identified n = 1087 articles from all databases and n = 712 were eligible for examination against inclusion criteria. A total of 168 systems were finally included and systematically analysed demonstrating a recent increase in uptake of ES in academic urology in particular artificial neural networks with 31 systems. Most of the systems were applied in urological oncology (prostate cancer = 15, bladder cancer = 13) where diagnostic, prognostic and survival predictor markers were investigated. Due to the heterogeneity of models and their statistical tests, a meta-analysis was not feasible.<h4>Conclusion</h4>ES utility offers an effective ML potential and their applications in research have demonstrated a valid model for multi-variate analysis. The complexity of their development can challenge their uptake in urological clinics whilst the limitation of the statistical tools in this domain has created a gap for further research studies. Integration of computer scientists in academic units has promoted the use of ES in clinical urological research.
KeywordsHumans
Prostatic Neoplasms
Urology
Expert Systems
MEDLINE
Male
Machine Learning
Article number223
JournalBMC Medical Informatics and Decision Making
Journal citation21 (1)
ISSN1472-6947
Year2021
PublisherBMC
Publisher's version
License
CC BY 4.0
File Access Level
Open (open metadata and files)
Digital Object Identifier (DOI)https://doi.org/10.1186/s12911-021-01585-9
PubMed ID34294092
Publication dates
Published online22 Jul 2021
Published in print01 Jul 2021
LicenseCC BY
File12911_2021_Article_1585.pdf

Related outputs

Machine Learning Prediction of Susceptibility to Visceral Fat Associated Diseases
Aldraimli, M., Soria, D., Parkinson, J., Thomas, E.L., Bell, J.D., Dwek, M. and Chaussalet, T.J. 2020. Machine Learning Prediction of Susceptibility to Visceral Fat Associated Diseases. Health and Technology. 10, pp. 925-944. https://doi.org/10.1007/s12553-020-00446-1

Machine Learning Classification of Females Susceptibility to Visceral Fat Associated Diseases
Aldraimli, M., Soria, D., Parkinson, J., Whitcher, B., Thomas, E.L., Bell, J.D., Chaussalet, T.J. and Dwek, M. 2019. Machine Learning Classification of Females Susceptibility to Visceral Fat Associated Diseases. MEDICON 2019: XV Mediterranean Conference on Medical and Biological Engineering and Computing. Coimbra, Portugal 26 - 28 Sep 2019 Springer. https://doi.org/10.1007/978-3-030-31635-8_81

Combining Clustering and Classification Ensembles: A Novel Pipeline to Identify Breast Cancer Profiles
Agrawal, U., Soria, D., Wagner, C., Garibaldi, J.M., Ellis, I.O., Bartlett, J.M.S., Cameron, D., Rakha, E.A. and Green, A.R. 2019. Combining Clustering and Classification Ensembles: A Novel Pipeline to Identify Breast Cancer Profiles. Artificial Intelligence in Medicine. 97, pp. 27-37. https://doi.org/10.1016/j.artmed.2019.05.002

Fuzzy Integral Driven Ensemble Classification using A Priori Fuzzy Measures
Agrawal, U., Wagner, C., Garibaldi, J.M. and Soria, D. 2019. Fuzzy Integral Driven Ensemble Classification using A Priori Fuzzy Measures. International Conference on Fuzzy Systems (FUZZ-IEEE 2019). 23 - 26 Jun 2019 IEEE . https://doi.org/10.1109/FUZZ-IEEE.2019.8858821

The combined expression of solute carriers is associated with a poor prognosis in highly proliferative ER+ breast cancer
El Ansari, R., Craze, M.L., Alfarsi, L., Soria, D., Diez-Rodriguez, M., Nolan, C.C., Ellis, I.O., Rakha, E.A. and Green, A.R. 2019. The combined expression of solute carriers is associated with a poor prognosis in highly proliferative ER+ breast cancer. Breast Cancer Research and Treatment. 175 (1), pp. 27-38. https://doi.org/10.1007/s10549-018-05111-w

Identifying Heavy Goods Vehicle Driving Styles in the United Kingdom
Figueredo, G.P., Agrawal, U., Mase, J.M.M., Mesgarpour, M., Wagner, C., Soria, D., Garibaldi, J.M., Siebers, P.O. and John, R.I. 2019. Identifying Heavy Goods Vehicle Driving Styles in the United Kingdom. IEEE Transactions on Intelligent Transportation Systems. 20 (9), pp. 3324-3336. https://doi.org/10.1109/TITS.2018.2875343

An End-to-End Deep Learning Histochemical Scoring System for Breast Cancer TMA
Liu, J., Xu, B., Zheng, C., Gong, Y., Garibaldi, J.M., Soria, D., Green, A., Ellis, I.O., Zou, W. and Qiu, G. 2019. An End-to-End Deep Learning Histochemical Scoring System for Breast Cancer TMA. IEEE Transactions on Medical Imaging. 38 (2), pp. 617-628. https://doi.org/10.1109/TMI.2018.2868333

Interpretability and Complexity of Design in the Creation of Fuzzy Logic Systems - A User Study
Razak, T.R., Garibaldi, J.M., Wagner, C., Pourabdollah, A. and Soria, D. 2018. Interpretability and Complexity of Design in the Creation of Fuzzy Logic Systems - A User Study. 2018 IEEE Symposium Series on Computational Intelligence. Bengaluru, India 18 - 21 Nov 2018 IEEE . https://doi.org/10.1109/SSCI.2018.8628924

Comparison of Fuzzy Integral-Fuzzy Measure based Ensemble Algorithms with the State-of-the-art Ensemble Algorithms
Agrawal, U., Pinar, A.J., Wagner, C., Havens, T.C., Soria, D. and Garibaldi, J.M. 2018. Comparison of Fuzzy Integral-Fuzzy Measure based Ensemble Algorithms with the State-of-the-art Ensemble Algorithms. Medina, J., Ojeda-Aciego, M., Verdegay, J.L., Perfilieva, I., Bouchon-Meunier, B. and Yager, R.R. (ed.) 17th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems. Cadiz, Spain 11 - 15 Jun 2018 Springer. https://doi.org/10.1007/978-3-319-91479-4

Development of a pre-operative scoring system for predicting risk of post-operative paediatric cerebellar mutism syndrome
Liu, J.-F., Dineen, R.A., Avula, S., Chambers, T., Dutta, M., Jaspan, T., MacArthur, D.C., Howarth, S., Soria, D., Quinlan, P., Harave, S., Ong, C.C., Mallucci, C.L., Kumar, R., Pizer, B. and Walker, D.A. 2018. Development of a pre-operative scoring system for predicting risk of post-operative paediatric cerebellar mutism syndrome. British Journal of Neurosurgery. 32 (1), pp. 18-27. https://doi.org/10.1080/02688697.2018.1431204

A multicentre integration of a computer-led follow-up of prostate cancer is valid and safe
Salem, H., Caddeo, G., McFarlane, J., Patel, K., Cochrane, L., Soria, D., Henley, M. and Lund, J. 2018. A multicentre integration of a computer-led follow-up of prostate cancer is valid and safe. BJU international. 122 (3), pp. 418-426 BJU14157. https://doi.org/10.1111/bju.14157

MYC regulation of Glutamine-Proline regulatory axis is key in Luminal B breast cancer
Craze, M.L., Cheung, H., Jewa, N., Coimbra, N.D.M., Soria, D., El-Ansari, R., Aleskandarany, M.A., Cheng, K.W., Diez-Rodriguez, M., Nolan, C.C., Ellis, I.O., Rakha, E. and Green, A.R. 2018. MYC regulation of Glutamine-Proline regulatory axis is key in Luminal B breast cancer. British Journal of Cancer. 118 (2), pp. 258-265. https://doi.org/10.1038/bjc.2017.387

Interpretability indices for hierarchical fuzzy systems
Razak, T.R., Garibaldi, J.M., Wagner, C., Pourabdollah, A. and Soria, D. 2017. Interpretability indices for hierarchical fuzzy systems. IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2017). Naples, Italy 09 - 12 Jul 2017 IEEE . https://doi.org/10.1109/FUZZ-IEEE.2017.8015616

Validation of a quantifier-based fuzzy classification system for breast cancer patients on external independent cohorts
Soria, D. and Garibaldi, J.M. 2016. Validation of a quantifier-based fuzzy classification system for breast cancer patients on external independent cohorts. IEEE International Conference on Machine Learning and Applications (ICMLA2016). Anaheim, California, USA 18 - 20 Dec 2016 IEEE . https://doi.org/10.1109/ICMLA.2016.0101

Nottingham Prognostic Index Plus: Validation of a clinical decision making tool in breast cancer in an independent series
Green, A.R., Soria, D., Stephen, J., Powe, D.G., Nolan, C.C., Kunkler, I., Thomas, J., Kerr, G.R., Jack, W., Cameron, D., Piper, T., Ball, G.R., Garibaldi, J.M., Rakha, E.A., Bartlett, J.M.S. and Ellis, I.O. 2016. Nottingham Prognostic Index Plus: Validation of a clinical decision making tool in breast cancer in an independent series. The Journal of Pathology: Clinical Research. 1 (2), pp. 32-40. https://doi.org/10.1002/cjp2.32

Illness Beliefs Predict Mortality in Patients with Diabetic Foot Ulcers
Vedhara, K., Dawe, K., Miles, J.N.V., Wetherell, M.A., Cullum, N., Dayan, C., Drake, N., Price, P., Tarlton, J., Weinman, J., Day, A., Campbell, R., Reps, J. and Soria, D. 2016. Illness Beliefs Predict Mortality in Patients with Diabetic Foot Ulcers. PLoS ONE. 11 (4) e0153315. https://doi.org/10.1371/journal.pone.0153315

Nottingham prognostic index plus (NPI+) predicts risk of distant metastases in primary breast cancer
Green, A.R., Soria, D., Powe, G., Nolan, C.C., Aleskandarany, N.M., Szász, M.A., Tőkés, A.M., Ball, G.R., Garibaldi, J.M., Rakha, E.A., Kulka, J. and Ellis, I.O. 2016. Nottingham prognostic index plus (NPI+) predicts risk of distant metastases in primary breast cancer. Breast Cancer Research and Treatment. 157 (1), pp. 65-75. https://doi.org/10.1007/s10549-016-3804-1

KI67 and DLX2 predict increased risk of metastasis formation in prostate cancer–a targeted molecular approach
Green, W.J.F., Ball, G., Hulman, G., Johnson, C., Van Schalwyk, G., Ratan, H.L., Soria, D., Garibaldi, J.M., Parkinson, R., Hulman, J., Rees, R. and Powe, D.G. 2016. KI67 and DLX2 predict increased risk of metastasis formation in prostate cancer–a targeted molecular approach. British Journal of Cancer. 115 (2), pp. 236-242. https://doi.org/10.1038/bjc.2016.169

Cancer subtype identification pipeline: A classifusion approach
Agrawal, U., Soria, D. and Wagner, C. 2016. Cancer subtype identification pipeline: A classifusion approach. Evolutionary Computation (CEC), 2016 IEEE Congress on. 24 - 29 Jul 2016 IEEE . https://doi.org/10.1109/CEC.2016.7744150

Markers of Progression in Early-Stage Invasive Breast Cancer: a Predictive Immunohistochemical Panel Algorithm for Distant Recurrence Risk Stratification
Aleskandarany, M.A., Soria, D., Green, A.R., Nolan, C., Diez-Rodriguez, M., Ellis, I.O. and Rakha, E.A. 2015. Markers of Progression in Early-Stage Invasive Breast Cancer: a Predictive Immunohistochemical Panel Algorithm for Distant Recurrence Risk Stratification. Breast Cancer Research and Treatment. 151 (2), pp. 325-333. https://doi.org/10.1007/s10549-015-3406-3

Practical detection of a definitive biomarker panel for Alzheimer’s Disease; comparisons between plasma and cerebrospinal fluid
Richens, J.L., Vere, K.-A., Light, R.A., Soria, D., Garibaldi, J.M., Smith, A.D., Warden, D., Wilcock, G., Bajaj, N., Morgan, K. and O’Shea, P. 2014. Practical detection of a definitive biomarker panel for Alzheimer’s Disease; comparisons between plasma and cerebrospinal fluid. International Journal of Molecular Epidemiology and Genetics. 5 (2), pp. 53-70.

Signalling Paediatric Side Effects using an Ensemble of Simple Study Designs
Reps, J.M., Aickelin, U., Garibaldi, J.M., Soria, D., Gibson, J.E. and Hubbard, R.B. 2014. Signalling Paediatric Side Effects using an Ensemble of Simple Study Designs. Drug Safety. 37 (3), pp. 163-170. https://doi.org/10.1007/s40264-014-0137-z

A Novel Semisupervised Algorithm for Rare Prescription Side Effect Discovery
Reps, J.M., Garibaldi, J.M., Aickelin, U., Soria, D., Gibson, J.E. and Hubbard, R.B. 2014. A Novel Semisupervised Algorithm for Rare Prescription Side Effect Discovery. IEEE Journal of Biomedical and Health Informatics. 18 (2), pp. 537-547. https://doi.org/10.1109/JBHI.2013.2281505

Guest Editorial: Data Mining in Bioinformatics
Reps, J.M., Garibaldi, J.M., Aickelin, U., Soria, D., Gibson, J.E. and Hubbard, R.B. 2014. Guest Editorial: Data Mining in Bioinformatics. IEEE Journal of Biomedical and Health Informatics. 18 (2), p. 483. https://doi.org/10.1109/JBHI.2014.2306988

Nottingham Prognostic Index Plus (NPI+): A Modern Clinical Decision Making Tool in Breast Cancer
Rakha, E., Soria, D., Green, A.R., Lemetre, C., Powe, D.G., Nolan, C.C., Garibaldi, J.M., Ball, G.R. and Ellis, I.O. 2014. Nottingham Prognostic Index Plus (NPI+): A Modern Clinical Decision Making Tool in Breast Cancer. British Journal of Cancer. 110 (7), pp. 1688-1697. https://doi.org/10.1038/bjc.2014.120

A methodology for automatic classification of breast cancer immunohistochemical data using semi-supervised Fuzzy c-Means
Lai, D.T.C., Garibaldi, J.M., Soria, D. and Roadknight, C.M. 2014. A methodology for automatic classification of breast cancer immunohistochemical data using semi-supervised Fuzzy c-Means. Central European Journal of Operations Research. 22 (3), pp. 475-499. https://doi.org/10.1007/s10100-013-0318-3

Permalink - https://westminsterresearch.westminster.ac.uk/item/v72zv/a-systematic-review-of-the-applications-of-expert-systems-es-and-machine-learning-ml-in-clinical-urology


Share this

Usage statistics

121 total views
70 total downloads
These values cover views and downloads from WestminsterResearch and are for the period from September 2nd 2018, when this repository was created.