Trends in suicidal behavior among hospitalized adolescents in Spain over two decades. Soriano, Vicente, Ramos, José Manuel, López-Ibor, María Inés, Chiclana-Actis, Carlos, Faraco, Manuel, González-Cabrera, Joaquín, González-Fraile, Eduardo, Mestre-Bach, Gemma, Pinargote, Héctor, Corpas, Manuel, Gallego, Lucía, Corral, Octavio and Blasco-Fontecilla, Hilario 2024. Trends in suicidal behavior among hospitalized adolescents in Spain over two decades. Journal of Affective Disorders. 363, pp. 106-111. https://doi.org/10.1016/j.jad.2024.07.081
Addressing Ancestry and Sex Bias in Pharmacogenomics Corpas, Manuel, Siddiqui, Moneeza K., Soremekun, Opeyemi, Mathur, Rohini, Gill, Dipender and Fatumo, Segun 2024. Addressing Ancestry and Sex Bias in Pharmacogenomics. Annual Review of Pharmacology and Toxicology. 64, pp. 53-64. https://doi.org/10.1146/annurev-pharmtox-030823-111731
2023
Multi-trait discovery and fine-mapping of lipid loci in 125,000 individuals of African ancestry Abram Bunya Kamiza, Sounkou M. Touré, Feng Zhou, Opeyemi Soremekun, Cheickna Cissé, Mamadou Wélé, Aboubacrine M. Touré, Oyekanmi Nashiru, Manuel Corpas, Moffat Nyirenda, Amelia Crampin, Jeffrey Shaffer, Seydou Doumbia, Eleftheria Zeggini, Andrew P. Morris, Jennifer L. Asimit, Tinashe Chikowore and Segun Fatumo 2023. Multi-trait discovery and fine-mapping of lipid loci in 125,000 individuals of African ancestry. Nature Communications . 14 5403. https://doi.org/10.1038/s41467-023-41271-0
2023
Genetic signature detected in T cell receptors from patients with severe COVID-19 Manuel Corpas, Carmen de Mendoza, Víctor Moreno-Torres, Ilduara Pintos, Pedro Seoane, James R. Perkins, Juan A.G. Ranea, Segun Fatumo, Tamas Korcsmaros, José Manuel Martín-Villa, Pablo Barreiro, Octavio Corral and Vicente Soriano 2023. Genetic signature detected in T cell receptors from patients with severe COVID-19. iScience. 26 (10) 107735. https://doi.org/10.1016/j.isci.2023.107735
2023
Equity, diversity, and inclusion at the Global Alliance for Genomics and Health Skantharajah, Neerjah, Baichoo, Shakuntala, Boughtwood, Tiffany F., Casas-Silva, Esmeralda, Chandrasekharan, Subhashini, Dave, Sanjay M., Fakhro, Khalid A., Falcon de Vargas, Aida B, Gayle, Sylvia S., Gupta, Vivek K., Hendricks-Sturrup, Rachele, Hobb, Ashley E., Li, Stephanie, Llamas, Bastien, Lopez-Correa, Catalina, Machirori, Mavis, Melendez-Zajgla, Jorge, Millner, Mareike A., Page, Angela J.H., Paglione, Laura D., Raven-Adams, Maili C., Smith, Lindsay, Thomas, Ericka M., Kumuthini, Judit and Corpas, Manuel 2023. Equity, diversity, and inclusion at the Global Alliance for Genomics and Health. Cell genomics. 3 (10) 100386. https://doi.org/10.1016/j.xgen.2023.100386
Predictors of in-hospital mortality in HIV-infected patients with COVID-19 Moreno-Torres, Victor, de Mendoza, Carmen, Martinez-Urbistondo, Maria, Mills, Patricia, Trevino, Ana, de la Fuente, Sara, de Santiago, Alberto Diaz, Calderon-Parra, Jorge, Pintos-Pascual, Ilduara, Corpas, Manuel, Soriano, Vicente and Corpas, M. 2023. Predictors of in-hospital mortality in HIV-infected patients with COVID-19. QJM: An International Journal of Medicine. 116 (1), pp. 57-62. https://doi.org/10.1093/qjmed/hcac215
2022
Is SARS- CoV-2 the only cause of long-COVID? Pintos-Pascual, Ilduara, Moreno-Torres, Victor, Ibanez-Estellez, Fatima, Corrales-Rodriguez, Pilar, Trevino, Ana, Corpas, Manuel, Corral, Octavio, Soriano, Vicente and de Mendoza, Carmen 2022. Is SARS- CoV-2 the only cause of long-COVID? AIDS Reviews. 24 (4), pp. 183-196. https://doi.org/10.24875/aidsrev.22000025
Transferability of genetic risk scores in African populations Abram B. Kamiza, Sounkou M. Toure, Marijana Vujkovic, Tafadzwa Machipisa, Opeyemi S. Soremekun, Christopher Kintu, Manuel Corpas, Fraser Pirie, Elizabeth Young, Dipender Gill, Manjinder S. Sandhu, Pontiano Kaleebu, Moffat Nyirenda, Ayesha A. Motala, Tinashe Chikowore and Segun Fatumo 2022. Transferability of genetic risk scores in African populations. Nature Medicine. https://doi.org/10.1038/s41591-022-01835-x
2021
Whole Genome Interpretation for a Family of Five Corpas, M., Megy, K., Mistry, V., Metastasio, A. and Lehmann, E. 2021. Whole Genome Interpretation for a Family of Five. Frontiers in Genetics. 12 535123. https://doi.org/10.3389/fgene.2021.535123
2018
Personal Genome Project UK (PGP-UK): A research and citizen science hybrid project in support of personalized medicine Beck, S., Berner, A.M., Bignell, G., Bond, M., Callanan, M.J., Chervova, O., Conde, L., Corpas, M., Ecker, S., Elliott, H.R., Fioramonti, S.A., Flanagan, A.M., Gaentzsch, R., Graham, D., Gribbin, D., Guerra-Assunção, J.A., Hamoudi, R., Harding, V., Harrison, P.L., Herrero, J., Hofmann, J., Jones, E., Khan, S., Kaye, J., Kerr, P., Libertini, E., Marks, L., McCormack, L., Moghul, I., Pontikos, N., Rajanayagam, S., Rana, K., Semega-Janneh, M., Smith, C.P., Strom, L., Umur, S., Webster, A.P., Williams, E.H., Wint, K. and Wood, J.N. 2018. Personal Genome Project UK (PGP-UK): A research and citizen science hybrid project in support of personalized medicine. BMC Medical Genomics. 11 108. https://doi.org/10.1186/s12920-018-0423-1
A FAIR guide for data providers to maximise sharing of human genomic data Corpas, M., Kovalevskaya, N.V., McMurray, A. and Nielsen, F.G.G. 2018. A FAIR guide for data providers to maximise sharing of human genomic data. PLOS Computational Biology. 14 (3) e1005873. https://doi.org/10.1371/journal.pcbi.1005873
2018
APPLaUD: Access for patients and participants to individual level uninterpreted genomic data Thorogood, A., Bobe, J., Prainsack, B., Middleton, A., Scott, E., Nelson, S., Corpas, M., Bonhomme, N., Rodriguez, L.L., Murtagh, M. and Kleiderman, E. 2018. APPLaUD: Access for patients and participants to individual level uninterpreted genomic data. Human Genomics. 12 7. https://doi.org/10.1186/s40246-018-0139-5
Four simple recommendations to encourage best practices in research software [version 1; referees: awaiting peer review] Jiménez, R.C., Kuzak, M., Alhamdoosh, M., Barker, M., Batut, B., Borg, M., Capella-Gutierrez, S., Hong, N.C., Cook, M., Corpas, M., Flannery, M., Leyla Garcia, L., Josep Ll. Gelpí, J.L., Simon Gladman, S., Carole Goble, C., González Ferreiro, M., Gonzalez-Beltran, A., Griffin, P.C., Grüning, B., Hagberg, J., Holub, P., Hooft, R., Ison, J., Katz, D.S., Leskošek, B., López Gómez, F., Luis J. Oliveira, L.J., David Mellor, D., Mosbergen, R., Mulder, N., Perez-Riverol, Y., Pergl, R., Pichler, H., Pope, B., Sanz, F., Schneider, M.V., Stodden, V., Suchecki, R., Vařeková, R.S., Talvik, H.-A., Todorov, I., Treloar, A., Tyagi, S., van Gompel, M., Vaughan, D., Via, A., Wang, X., Watson-Haigh, N.S. and Crouch, S. 2017. Four simple recommendations to encourage best practices in research software [version 1; referees: awaiting peer review]. F1000Research. 6 876. https://doi.org/10.12688/f1000research.11407.1
2017
BioCIDER: a Contextualisation InDEx for biological Resources discovery Horro, C., Cook, M., Attwood, T.K., Brazas, M.D., Hancock, J.M., Palagi, P., Corpas, M. and Jimenez, R. 2017. BioCIDER: a Contextualisation InDEx for biological Resources discovery. Bioinformatics. 33 (16), pp. 2607-2608. https://doi.org/10.1093/bioinformatics/btx213
Crowdsourced direct-to-consumer genomic analysis of a family quartet Corpas, M., Valdivia-Granda, W., Torres, N., Greshake, B., Coletta, A., Knaus, A., Harrison, A.P., Cariaso, M., Moran, F., Nielsen, F., Swan, D., Weiss Solís, D.Y., Krawitz, P., Schacherer, F., Schols, P., Yang, H., Borry, P., Glusman, G. and Robinson, P.N. 2015. Crowdsourced direct-to-consumer genomic analysis of a family quartet. BMC Genomics. 16 910. https://doi.org/10.1186/s12864-015-1973-7
2015
Cutting Edge: Lessons from fraxinus, a crowd-sourced citizen science game in genomics Rallapalli, G., Players, F., Saunders, D.G., Yoshida, K., Edwards, A., Lugo, C.A., Collin, S., Clavijo, B., Corpas, M., Swarbreck, D., Clark, M., Downie, J.A., Kamoun, S., Cooper, T. and Maclean, D. 2015. Cutting Edge: Lessons from fraxinus, a crowd-sourced citizen science game in genomics. eLife. 4 e07460. https://doi.org/10.7554/elife.07460
2015
Anatomy of BioJS, an open source community for the life sciences Yachdav, G., Goldberg, T., Wilzbach, S., Dao, D., Shih, I., Choudhary, S., Crouch, S., Franz, M., García, A., García, L.J., Grüning, B.A., Inupakutika, D., Sillitoe, I., Thanki, A.S., Vieira, B., Villaveces, J.M., Schneider, M.V., Lewis, S., Pettifer, S., Rost, B. and Corpas, M. 2015. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4 e07009. https://doi.org/10.7554/elife.07009.001
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training Atwood, T.K., Bongcam-Rudloff, E., Brazas, M.E., Corpas, M., Gaudet, P., Lewitter, F., Mulder, N., Palagi, P.M., Schneider, M.V., van Gelder, C.W.G., Attwood, T.K., Banag, C., Blackford, S., Blatter, M.C., Bongcam-Rudloff, E., Brazas, M.D., Brooksbank, C., Budd, A., Charleston, M., Christoffels, A., Conesa, A., Crowe, M., Davies, A., de Crecy-Lagard, V., De Las Rivas, J., Doyle, M., Edwards, R., Facchiano, A., Fernandes, P., Gaeta, B., Gaudet, P., Heger, A., Herringa, J., Hughes, D., Jimenez, R.C., Kille, P., Korpelainen, E., Kumuthini, J., Lewitter, F., MacLean, D., Martinez, S.A.R., McGrath, A., Michalopoulos, I., Mulder, N., Ouellette, B.F., Palagi, P.M., Pearson, W.R., Qi, W., Romano, P., Rother, K., Sansone, S-A., Schneider, M.V., Schönbach, C., Tastan-Bishop, O., Trelles, O., Twells, R., van Gelder, C.W.G., Via, A., Vriend, G., Warnow, T., Watson, M., Westervelt, N. and Zanzoni, A. 2015. GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLOS Computational Biology. 11 (5) e1004281. https://doi.org/10.1371/journal.pcbi.1004143
2015
A quick guide for building a successful bioinformatics community Budd, A., Corpas, M., Brazas, M.D., Fuller, J.C., Goecks, J., Mulder, N.J., Michaut, M., Ouellette, B.F.F., Pawlik, A. and Blomberg, N. 2015. A quick guide for building a successful bioinformatics community. PLOS Computational Biology. 11 (2) e1003972. https://doi.org/10.1371/journal.pcbi.1003972
2015
The GOBLET training portal: A global repository of bioinformatics training materials, courses and trainers Corpas, M., Jimenez, R.C., Bongcam-Rudloff, E., Budd, A., Brazas, M.D., Fernandes, P.L., Gaeta, B., Van Gelder, C., Korpelainen, E., Lewitter, F., McGrath, A., MacLean, D., Palagi, P.M., Rother, K., Taylor, J., Via, A., Watson, M., Schneider, M.V. and Attwood, T.K. 2015. The GOBLET training portal: A global repository of bioinformatics training materials, courses and trainers. Bioinformatics. 31 (1), pp. 140-142. https://doi.org/10.1093/bioinformatics/btu601
2014
DNAContentViewer a BioJS component to visualise GC/AT Content Thanki, A.S., Caim, S., Corpas, M. and Davey, R.P. 2014. DNAContentViewer a BioJS component to visualise GC/AT Content. F1000Research. 3 54. https://doi.org/10.12688/f1000research.3-54.v1
2014
wigExplorer, a BioJS component to visualise wig data Thanki, A.S., Jimenez, R.C., Kaithakottil, G.G., Corpas, M. and Davey, R.P. 2014. wigExplorer, a BioJS component to visualise wig data. F1000Research. 3 53. https://doi.org/10.12688/f1000research.3-53.v1
2014
BioJS: An open source standard for biological visualisation - its status in 2014 Corpas, M., Jimenez, R., Carbon, S.J., GarcÍa, A., Garcia, L., Goldberg, T., Gomez, J., Kalderimis, A., Lewis, S.E., Mulvany, I., Pawlik, A., Rowland, F., Salazar, G., Schreiber, F., Sillitoe, I., Spooner, W.H., Thanki, A.S., Villaveces, J.M., Yachdav, G. and Hermjakob, H. 2014. BioJS: An open source standard for biological visualisation - its status in 2014. F1000Research. 3 55. https://doi.org/10.12688/f1000research.3-55.v1
iAnn: an event sharing platform for the life sciences Jimenez, R.C., Albar, J.P., Bhak, J., Blatter, M.C., Blicher, T., Brazas, M.D., Brooksbank, C., Budd, A., De Las Rivas, J., Dreyer, J., van Driel, M.A., Dunn, M.J., Fernandes, P.L., van Gelder, C.W., Hermjakob, H., Ioannidis, V., Judge, D.P., Kahlem, P., Korpelainen, E., Kraus, H.J., Loveland, J., Mayer, C., McDowall, J., Moran, F., Mulder, N., Nyronen, T., Rother, K., Salazar, G.A., Schneider, R., Via, A., Villaveces, J.M., Yu, P., Schneider, M.V., Attwood, T.K. and Corpas, M. 2013. iAnn: an event sharing platform for the life sciences. Bioinformatics. 29 (15), pp. 1919-1921. https://doi.org/10.1093/bioinformatics/btt306
2013
BioJS: an open source JavaScript framework for biological data visualization Gómez, J., García, L.J., Salazar, G.A., Villaveces, J., Gore, S., García, A., Martín, M.J., Launay, G., Alcántara, R., Del-Toro, N., Dumousseau, M., Orchard, S., Velankar, S., Hermjakob, H., Zong, C., Ping, P., Corpas, M. and Jiménez, R.C. 2013. BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics. 29 (8), pp. 1103-1104. https://doi.org/10.1093/bioinformatics/btt100
2012
A genome blogger manifesto Corpas, M. 2012. A genome blogger manifesto. GigaScience. 1 (1) 15. https://doi.org/10.1186/2047-217x-1-15
2012
DECIPHER: web-based, community resource for clinical interpretation of rare variants in developmental disorders. Swaminathan, G.J., Bragin, E., Chatzimichali, E.A., Corpas, M., Bevan, A.P., Wright, C.F., Carter, N.P., Hurles, M.E. and Firth, H.V. 2012. DECIPHER: web-based, community resource for clinical interpretation of rare variants in developmental disorders. Human Molecular Genetics. 21 (R1), pp. R37-R44. https://doi.org/10.1093/hmg/dds362
2012
How not to be a bioinformatician Corpas, M., Fatumo, S. and Schneider, R. 2012. How not to be a bioinformatician. Source Code for Biology and Medicine. 7 3. https://doi.org/10.1186/1751-0473-7-3
2012
Interpretation of genomic copy number variants using DECIPHER Corpas, M., Bragin, E., Clayton, S., Bevan, P. and Firth, H.V. 2012. Interpretation of genomic copy number variants using DECIPHER. Current Protocols in Human Genetics. Chapter 8:Unit 8.14. https://doi.org/10.1002/0471142905.hg0814s72
2011
myKaryoView: a light-weight client for visualization of genomic data Jimenez, R.C., Salazar, G.A., Gel, B., Dopazo, J., Mulder, N. and Corpas, M. 2011. myKaryoView: a light-weight client for visualization of genomic data. PLoS ONE. 6 (10) e26345. https://doi.org/10.1371/journal.pone.0026345
2009
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources. Firth, H.V., Richards, S.M., Bevan, A.P., Clayton, S., Corpas, M., Rajan, D., Van Vooren, S., Moreau, Y., Pettett, R.M. and Carter, N.P. 2009. DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources. The American Journal of Human Genetics. 84 (4), pp. P524-533. https://doi.org/10.1016/j.ajhg.2009.03.010
2008
Ten simple rules for organizing a scientific meeting. Corpas, M., Gehlenborg, N., Janga, S.C. and Bourne, P.E. 2008. Ten simple rules for organizing a scientific meeting. PLOS Computational Biology. 4 (6) e1000080. https://doi.org/10.1371/journal.pcbi.1000080
Editorial: Personal Genomes: Accessing, Sharing, and Interpretation Corpas, Manuel, Beck, Stephan, Glusman, Gustavo and Shabani, Mahsa 2021. Editorial: Personal Genomes: Accessing, Sharing, and Interpretation. Frontiers in Genetics. 12 687584. https://doi.org/10.3389/fgene.2021.687584
2015
Ten Simple Rules for Organizing an Unconference Budd, A., Dinkel, H., Corpas, M., Fuller, J.C., Rubinat, L., Devos, D.P., Khoueiry, P.H., Förstner, K.U., Georgatos, F., Rowland, F., Sharan, M., Binder, J.X., Grace, T., Traphagen, K., Gristwood, A. and Wood, N.T. 2015. Ten Simple Rules for Organizing an Unconference. PLOS Computational Biology. 11 (1) e1003905. https://doi.org/10.1371/journal.pcbi.1003905
2011
Bamako 2009 Conference on the Bioinformatics of Infectious Diseases Corpas, M., Doumbia, S., Gascuel, O. and Mulder, N. 2011. Bamako 2009 Conference on the Bioinformatics of Infectious Diseases. Infection, Genetics and Evolution. 11 (4), pp. 695-697. https://doi.org/10.1016/j.meegid.2011.02.012
2021
A Key Action Plan for Education in a Global Crisis Soriano, V., Cordona, P. and Corpas, M. 2021. A Key Action Plan for Education in a Global Crisis. in: Burgos, D., Tlili, A. and Tabacco, A. (ed.) Radical Solutions for Education in a Crisis Context Springer. pp. 263-272
ENFIN - An integrative structure for systems biology Reisinger, F., Corpas, M., Hancock, J., Hermjakob, H., Birney, E. and Kahlem, P. 2008. ENFIN - An integrative structure for systems biology. in: International Workshop on Data Integration in the Life Sciences Springer. pp. 132-143
Simplifying access to human genomic data: community platform Repositive.io Kovalevskaya, N. V., Whicher, C., Corpas, M., Shaw, R. and Nielsen, F. 2019. Simplifying access to human genomic data: community platform Repositive.io. European Journal of Human Genetics. 26 (S), p. 714. https://doi.org/10.1038/s41431-018-0247-7
Crowdsourcing the corpasome Corpas M 2013. Crowdsourcing the corpasome. Source Code for Biology and Medicine. 8 13. https://doi.org/10.1186/1751-0473-8-13
A family experience of personal genomics Corpas, M. 2012. A family experience of personal genomics. Journal of Genetic Counseling. 21 (3), pp. 386-391. https://doi.org/10.1007/s10897-011-9473-7
2007
PFF--an integrated database of residues and fragments critical for protein folding Corpas, M., Sinnott, J., Thorne, D., Pettifer, S., Attwood , T. and the PFF consortium 2007. PFF--an integrated database of residues and fragments critical for protein folding. BMC Systems Biology. 1 P48. https://doi.org/10.1186/1752-0509-1-S1-P48
Progress on the genome characterisation of D. alata Corpas, M. 2016. Progress on the genome characterisation of D. alata. Plant and Animal Genome XXIV Conference. Town & Country Resort & Convention Center 09 - 13 Jan 2016
2009
DECIPHER: Shedding Light on Chromosomal Imbalance and Phenotype Interpretation Corpas, M., Richards, S., Bevan, P., van Vooren, S., Pettett, R., Firth, H. and Carter, N. 2009. DECIPHER: Shedding Light on Chromosomal Imbalance and Phenotype Interpretation. 7th European Cytogenetics Conference. Stockholm, Sweden 04 - 07 Jul 2009
2007
Folding patterns in protein sequences Corpas, M. 2007. Folding patterns in protein sequences. PhD thesis University of Manchester https://doi.org/10.6084/m9.figshare.964811.v1
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