Inhibiting CDK4/6 in pancreatic ductal adenocarcinoma via microRNA-21

miR-210 Mediated Hypoxic Responses in Pancreatic Ductal Adenocarcinoma
Mortoglou, M., Lian, M., Miralles, F., Dart, D.A. and Uysal Onganer, P. 2024. miR-210 Mediated Hypoxic Responses in Pancreatic Ductal Adenocarcinoma. ACS Omega. 9 (48), pp. 47872-47883. https://doi.org/10.1021/acsomega.4c08947

Extracellular vesicles and citrullination signatures are novel biomarkers in sturgeon (Acipenser gueldenstaedtii) during chronic stress due to seasonal temperature challenge
Ferreira, A.M., Silva-Álvarez, V., Kraev, I., Uysal Onganer, P. and Lange, S. 2024. Extracellular vesicles and citrullination signatures are novel biomarkers in sturgeon (Acipenser gueldenstaedtii) during chronic stress due to seasonal temperature challenge. Fish and Shellfish Immunology. 154 (8), p. 109974 109974. https://doi.org/10.1016/j.fsi.2024.109974

Low Magnetic Field Exposure Alters Prostate Cancer Cell Properties
Lange, S., Inal, J.M., Kraev, I., Dart, D. and Uysal Onganer, P. 2024. Low Magnetic Field Exposure Alters Prostate Cancer Cell Properties. Biology. 13 (9), p. 734 13090734. https://doi.org/10.3390/biology13090734

Doctors’ and nurses’ eating practices during shift work: Findings from a qualitative study
Sum, K., Cheshire, A., Ridge, Damien T., Sengupta, D. and Deb, D.S. 2024. Doctors’ and nurses’ eating practices during shift work: Findings from a qualitative study. Proceedings of the Nutrition Society. 83 (OCE2), p. E204. https://doi.org/10.1017/s0029665124004282

Selective induction of senescence in cancer cells through near-infrared light treatment via mitochondrial modulation
Kalampouka, I., Mould, R., Botchway, S., Mackenzie, A.M., Nunn, A., Thomas, E.L. and Bell, J.D. 2024. Selective induction of senescence in cancer cells through near-infrared light treatment via mitochondrial modulation. Journal of Biophotonics. 17 (8) e202400046. https://doi.org/10.1002/jbio.202400046

Exploring the potential link between prostate cancer and magnetic fields
Alwyn Dart, D., Koushyar, S. and Uysal Onganer, P. 2024. Exploring the potential link between prostate cancer and magnetic fields. Medical Hypotheses. 189 111384. https://doi.org/10.1016/j.mehy.2024.111384

Analysis of androgen receptor expression and activity in the mouse brain
D. Alwyn Dart, Charlotte L. Bevan, Pinar Uysal Onganer and Wen Guo Jiang 2024. Analysis of androgen receptor expression and activity in the mouse brain. Scientific Reports. 14 11115. https://doi.org/10.1038/s41598-024-61733-9

BRCA Mutations and MicroRNA Expression Patterns in the Peripheral Blood of Breast Cancer Patients
Alavanda, Ceren, Dirimtekin, Esra, Mortoglou, Maria, Uysal Onganer, Pinar, Arslan Ates, Esra and Guney, Ahmet Ilter 2024. BRCA Mutations and MicroRNA Expression Patterns in the Peripheral Blood of Breast Cancer Patients. ACS Omega. 9 (15), pp. 17217-17228. https://doi.org/10.1021/acsomega.3c10086

The Use of NADH Anisotropy to Investigate Mitochondrial Cristae Alignment
Smith, H.E., Mackenzie, A.M., Seddon, C., Mould, R., Kalampouka, I., Bateman, B., Needham, S.R., Beis, K., Bell, J.D., Nunn, A. and Botchway, S.W. 2024. The Use of NADH Anisotropy to Investigate Mitochondrial Cristae Alignment. Scientific Reports. 14 5980. https://doi.org/10.1038/s41598-024-55780-5

Ultra Weak Photon Emission - A Brief Review
Mould, R., Mackenzie, A.M., Kalampouka, I., Nunn, A., Thomas, E.L., Bell, J.D. and Botchway, S.W. 2024. Ultra Weak Photon Emission - A Brief Review. Frontiers in Physiology - Biophysics. 15 1348915. https://doi.org/10.3389/fphys.2024.1348915

Rooting out ultraweak photon emission a-mung bean sprouts
Mackenzie, A.M., Smith, H.E., Mould, R., Bell, J.D., Nunn, A. and Botchway, S.W. 2024. Rooting out ultraweak photon emission a-mung bean sprouts. Journal of Photochemistry and Photobiology. 19 100224. https://doi.org/10.1016/j.jpap.2023.100224

Impact of Hypoxia-Induced miR-210 on Pancreatic Cancer
Lian, M., Mortoglou, M. and Uysal Onganer, P. 2023. Impact of Hypoxia-Induced miR-210 on Pancreatic Cancer. Current Issues in Molecular Biology. 45 (12), pp. 9778-9792. https://doi.org/10.3390/cimb45120611

The Cavendish Living lab - a multidisciplinary, vertically integrated project focused on sustainability
Basnett, P., Percy, L., Sengupta, D. and Smith, C.L. 2023. The Cavendish Living lab - a multidisciplinary, vertically integrated project focused on sustainability. Westminster Learning and Teaching Symposium 2023: Better Than the Real Thing? Exploring Education Futures at the University of Westminster. University of Westminster 04 Sep 2023

Antiviral Drug Target Identification and Ligand Discovery
Patel, Hershna and Sengupta, Dipankar 2023. Antiviral Drug Target Identification and Ligand Discovery. in: Gore, M. and Jagtap, U.B. (ed.) Computational Drug Discovery and Design Springer.

Non-chemical Signalling Between Mitochondria
Mould, R., Kalampouka, I., Thomas, E.L., Guy, G., Nunn, A. and Bell, J.D. 2023. Non-chemical Signalling Between Mitochondria. Frontiers in Physiology. 14 1268075. https://doi.org/10.3389/fphys.2023.1268075

miR-34a-FOXP1 Loop in Ovarian Cancer
Dirimtekin, E., Mortoglou, M., Alavanda, C., Yemlahi, A.B., Ates, E.A., Guney, I. and Uysal Onganer, P. 2023. miR-34a-FOXP1 Loop in Ovarian Cancer. ACS Omega. 8 (30), pp. 27743-27750. https://doi.org/10.1021/acsomega.3c03867

Prohibitin Links Cell Cycle, Motility and Invasion in Prostate Cancer Cells
Koushyar, S., Uysal Onganer, P., Jiang, W.G. and Dart , D.A. 2023. Prohibitin Links Cell Cycle, Motility and Invasion in Prostate Cancer Cells. International Journal of Molecular Sciences. 24 (12) 9919. https://doi.org/10.3390/ijms24129919

Smart Urban Metabolism: A Big-Data and Machine Learning Perspective
Ruchira Ghosh and Dipankar Sengupta 2023. Smart Urban Metabolism: A Big-Data and Machine Learning Perspective. in: Urban Metabolism and Climate Change Springer. pp. 325–344

The Use of Plant Steroids in Viral Disease Treatments: Current Status and Future Perspectives
Obakan Yerlikaya, P., Arisan, E.D., Mehdizadehtapeh, L., Uysal Onganer, P. and Coker-Gurkan, A. 2023. The Use of Plant Steroids in Viral Disease Treatments: Current Status and Future Perspectives. European Journal of Biology. 82 (1), pp. 86-94. https://doi.org/10.26650/EurJBiol.2023.1130357

Licorice Root Ameliorates Drug Induced Mitochondrial Stress in MCF7 and MCF10A Cells
Woodley, S, Butt, J, Mould, R, Kalampouka, I, Booker, A and Bell, J 2022. Licorice Root Ameliorates Drug Induced Mitochondrial Stress in MCF7 and MCF10A Cells. Planta Medica. 88 (15), p. 1513. https://doi.org/10.1055/s-0042-1759190

microRNA 1307 Is a Potential Target for SARS-CoV-2 Infection: An <i>in Vitro</i> Model
Arisan, Elif Damla, Dart, D. Alwyn, Grant, Guy H., Dalby, A.R., Kancagi, Derya Dilek, Turan, Raife Dilek, Yurtsever, Bulut, Karakus, Gozde Sir, Ovali, Ercument, Lange, Sigrun and Uysal-Onganer, P. 2022. microRNA 1307 Is a Potential Target for SARS-CoV-2 Infection: An <i>in Vitro</i> Model. ACS Omega. 7 (42), pp. 38003-38014. https://doi.org/10.1021/acsomega.2c05245

Cell-Cell Death Communication by Signals Passing Through Non-Aqueous Environments: A Reply
Mould, R., Thomas, E.L., Guy, G., Nunn, A. and Bell, J.D. 2022. Cell-Cell Death Communication by Signals Passing Through Non-Aqueous Environments: A Reply . Results in Chemistry. 4 100538. https://doi.org/10.1016/j.rechem.2022.100538

3D Disease Modelling of Hard and Soft Cancer Using PHA-Based Scaffolds
Tomar, A., Uysal-Onganer, P., Basnett, P., Pati, U. and Roy, I. 2022. 3D Disease Modelling of Hard and Soft Cancer Using PHA-Based Scaffolds. Cancers. 14 (14) e3549. https://doi.org/10.3390/cancers14143549

microRNA expression in acute myeloid leukaemia: New targets for therapy?
Fletcher, D., Brown, E., Javadala, J., Uysal Onganer, P. and Guinn, B-A. 2022. microRNA expression in acute myeloid leukaemia: New targets for therapy? European Journal of Haemotology. 3 (3), pp. 596-608. https://doi.org/10.1002/jha2.441

Epigenetic Mechanisms of Metal Carcinogenicity
Manić, L., Wallace, D., Uysal Onganer, P., Taalab, Y.M., Farooqi, A.A., Antonijević, B. and Djordjevic, A.B. 2022. Epigenetic Mechanisms of Metal Carcinogenicity. Toxicology Reports. 9, pp. 778-787. https://doi.org/10.1016/j.toxrep.2022.03.037

Nickel's Role in Pancreatic Ductal Adenocarcinoma: Potential Involvement of microRNAs
Mortoglou, M., Manić, L., Buha Djordjevic, A., Bulat, Z., Đorđević, Vladimir, Manis, Katherine, Valle, Elizabeth, York, Lauren, Wallace, D. and Uysal Onganer, P. 2022. Nickel's Role in Pancreatic Ductal Adenocarcinoma: Potential Involvement of microRNAs. Toxics. 10 (3) 148. https://doi.org/10.3390/toxics10030148

microRNA-21 Regulates Stemness in Pancreatic Ductal Adenocarcinoma Cells
Mortoglou, M., Miralles, F., Arisan, E.D., Dart, A., Jurcevic, S., Lange, S. and Uysal Onganer, P. 2022. microRNA-21 Regulates Stemness in Pancreatic Ductal Adenocarcinoma Cells. International Journal of Molecular Sciences. 23 (3) 1275. https://doi.org/10.3390/ijms23031275

Interpretable semisupervised classifier for predicting cancer stages
Grau, I., Sengupta, D. and Nowe, A. 2021. Interpretable semisupervised classifier for predicting cancer stages. in: Kumar, P., Kumar, Y. and Tawhid, M.A. (ed.) Machine Learning, Big Data, and IoT for Medical Informatics Academic Press. pp. 241-259

Artificial Intelligence in Precision Medicine: A Perspective in Biomarker and Drug Discovery
Sengupta, D. and Santoshi, S. 2021. Artificial Intelligence in Precision Medicine: A Perspective in Biomarker and Drug Discovery. in: Saxena, A. and Chandra, S. (ed.) Artificial Intelligence and Machine Learning in Healthcare Springer. pp. 71-88

An ensemble approach for evaluating the cognitive performance of human population at high altitude
Sengupta, D., Sharma, V.K., Hota, S.K., Srivastava, R.B. and Naik, P.K. 2021. An ensemble approach for evaluating the cognitive performance of human population at high altitude. in: Kumar, P., Kumar, Y. and Tawhid, M.A. (ed.) Machine Learning, Big Data, and IoT for Medical Informatics Academic Press. pp. 165-178

Machine learning in precision medicine
Sengupta, D. 2021. Machine learning in precision medicine. in: Kumar, P., Kumar, Y. and Tawhid, M.A. (ed.) Machine Learning, Big Data, and IoT for Medical Informatics Academic Press. pp. 405-419

Role of microRNAs in response to cadmium chloride in pancreatic ductal adenocarcinoma
Mortoglou, M., Djordjevic, A.B., Djordjevic, V., Collins, H., York, L., Mani, K., Valle, E., Wallace, D. and Uysal Onganer, P. 2021. Role of microRNAs in response to cadmium chloride in pancreatic ductal adenocarcinoma. Archives of Toxicology. 96, p. 467–485. https://doi.org/10.1007/s00204-021-03196-9

The Role of CDK4 in the Pathogenesis of Pancreatic Cancer.
Jiggens, E., Mortoglou, M., Grant, G.H. and Uysal-Onganer, P. 2021. The Role of CDK4 in the Pathogenesis of Pancreatic Cancer. Healthcare. 9 (11) 1478. https://doi.org/10.3390/healthcare9111478

In Vitro Investigations of miR-33a Expression in Estrogen Receptor-Targeting Therapies in Breast Cancer Cells
Ozfiliz Kilbas, P., Ozlem Sonmez, Pinar Obakan-Yerlikaya, Ajda Coker-Gurkan, Narcin Palavan-Ünsal, Uysal Onganer, P. and Arisan, E. 2021. In Vitro Investigations of miR-33a Expression in Estrogen Receptor-Targeting Therapies in Breast Cancer Cells. Cancers. 13 (21), p. e5322. https://doi.org/10.3390/cancers13215322

Prostate Cancer Cell Extracellular Vesicles Increase Mineralisation of Bone Osteoblast Precursor Cells in an In Vitro Model
Ben Lanning, Webber, J., Uysal Onganer, P., Jiang, W., Aled Clayton and Dart, D. 2021. Prostate Cancer Cell Extracellular Vesicles Increase Mineralisation of Bone Osteoblast Precursor Cells in an In Vitro Model. Biology. 10 (4) 318. https://doi.org/10.3390/biology10040318

Acetate induces growth arrest in colon cancer cells through modulation of mitochondrial function
Sahuri Arisoylu, M., Mould, R., Shinjyo, N., Bligh, S.W.A., Nunn, A., Guy, G., Thomas, E.L. and Bell, J.D. 2021. Acetate induces growth arrest in colon cancer cells through modulation of mitochondrial function. Frontiers in Nutrition: Nutrition and Metabolism. 8 588466. https://doi.org/10.3389/fnut.2021.588466

AMPK Is the Crucial Target for the CDK4/6 Inhibitors Mediated Therapeutic Responses in PANC-1 and MIA PaCa-2 Pancreatic Cancer Cell Lines
Sevgin, B., Coban, M., Özge Rencuzogullari, Coker Gurkan, A., Obakan Yerlikaya, P., Uysal Onganer, P. and Arisan, E. 2021. AMPK Is the Crucial Target for the CDK4/6 Inhibitors Mediated Therapeutic Responses in PANC-1 and MIA PaCa-2 Pancreatic Cancer Cell Lines. Stresses. 1 (1), pp. 48-68. https://doi.org/10.3390/stresses1010005

MicroRNA-Regulated Signaling Pathways: Potential Biomarkers for Pancreatic Ductal Adenocarcinoma
Mortoglou, M., Wallace, D., Buha Djordjevic, A., Vladimir Djordjevic, Arisan, E. and Uysal Onganer, P. 2021. MicroRNA-Regulated Signaling Pathways: Potential Biomarkers for Pancreatic Ductal Adenocarcinoma. Stresses. 1 (1), pp. 30-47. https://doi.org/10.3390/stresses1010004

Cannabidiol modulates mitochondrial redox and dynamics in MCF7 cancer cells: a study using fluorescence lifetime imaging microscopy of NAD(P)H
Mould, R., Botchway, S, Parkinson, J., Thomas, E.L., Guy, G., Bell, J.D. and Nunn, A. 2021. Cannabidiol modulates mitochondrial redox and dynamics in MCF7 cancer cells: a study using fluorescence lifetime imaging microscopy of NAD(P)H. Frontiers in Molecular Biosciences. 8 630107. https://doi.org/10.3389/fmolb.2021.630107

MiR-21 Is Required for the Epithelial–Mesenchymal Transition in MDA-MB-231 Breast Cancer Cells
Arisan, E., Rencuzogullari, O., Clara Cieza-Borrella, Miralles Arenas, F., Miriam Dwek, Lange, S. and Uysal Onganer, P. 2021. MiR-21 Is Required for the Epithelial–Mesenchymal Transition in MDA-MB-231 Breast Cancer Cells. International Journal of Molecular Sciences. 22 (4), p. e1557 1557. https://doi.org/10.3390/ijms22041557

Peptidylarginine Deiminase Inhibitor Application, Using Cl-Amidine, PAD2, PAD3 and PAD4 Isozyme-Specific Inhibitors in Pancreatic Cancer Cells, Reveals Roles for PAD2 and PAD3 in Cancer Invasion and Modulation of Extracellular Vesicle Signatures
Uysal Onganer, P., D'alessio, S., Mortoglou, M., Kraev, I. and Lange, S. 2021. Peptidylarginine Deiminase Inhibitor Application, Using Cl-Amidine, PAD2, PAD3 and PAD4 Isozyme-Specific Inhibitors in Pancreatic Cancer Cells, Reveals Roles for PAD2 and PAD3 in Cancer Invasion and Modulation of Extracellular Vesicle Signatures. International Journal of Molecular Sciences. 22 (3) 1396. https://doi.org/10.3390/ijms22031396

MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species
Lange, S., Arisan, E.D., Grant, G.H. and Uysal Onganer, P. 2021. MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species. MDPI Viruses. 13 (1), p. 117 10.3390/v13010117 . https://doi.org/10.3390/v13010117

An interpretable semi-supervised classifier using rough sets for amended self-labeling
Grau, I., Sengupta, D., Garcia Lorenzo, M.M. and Nowe, A. 2020. An interpretable semi-supervised classifier using rough sets for amended self-labeling. IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2020). Glasgow, UK 19 - 24 Jul 2020 IEEE . https://doi.org/10.1109/fuzz48607.2020.9177549

Elevated microRNA expression could be diagnostic biomarker for PDAC
Mortoglou, M., Arisan, D., Ferreira, T., McCormick, A.L. and Uysal Onganer, P. 2020. Elevated microRNA expression could be diagnostic biomarker for PDAC. Pancreatology. 20 (8) e19. https://doi.org/10.1016/j.pan.2020.10.015

Specific c-Jun N-Terminal Kinase Inhibitor, JNK-IN-8 Suppresses Mesenchymal Profile of PTX-Resistant MCF-7 Cells through Modulating PI3K/Akt, MAPK and Wnt Signaling Pathways
Ozfiliz Kilbas, P., Sonmez, Ozlem, Uysal Onganer, P., Coker Gurkan, A., Obakan Yerlikaya, P. and Arisan, Elif Damla 2020. Specific c-Jun N-Terminal Kinase Inhibitor, JNK-IN-8 Suppresses Mesenchymal Profile of PTX-Resistant MCF-7 Cells through Modulating PI3K/Akt, MAPK and Wnt Signaling Pathways. Biology. 9 (10), p. e320. https://doi.org/10.3390/biology9100320

Putative Roles for Peptidylarginine Deiminases in COVID-19
Arisan, E., Uysal Onganer, P. and Lange, S. 2020. Putative Roles for Peptidylarginine Deiminases in COVID-19. International Journal of Molecular Sciences. 21 (13) 4662. https://doi.org/10.3390/ijms21134662

The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities
Arisan, E.D., Dart, A., Grant, G.H., Arisan, S., Cuhadaroglu, S., Lange, S. and Uysal Onganer, P. 2020. The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities. MDPI Viruses. 12 (6) 614. https://doi.org/10.3390/v12060614

Protein Deimination Signatures in Plasma and Plasma-EVs and Protein Deimination in the Brain Vasculature in a Rat Model of Pre-Motor Parkinson’s Disease
Marco Sancandi, Uysal Onganer, P., Igor Kraev, Mercer, A. and Lange, S. 2020. Protein Deimination Signatures in Plasma and Plasma-EVs and Protein Deimination in the Brain Vasculature in a Rat Model of Pre-Motor Parkinson’s Disease. International Journal of Molecular Sciences. 21 (8) 2743. https://doi.org/10.3390/ijms21082743

Demonstration of microRNA using in situ hybridisation on formalin fixed paraffin wax samples using conventional oligonucleotide probes: a comparison with the use of locked nucleic acid probes
Warford, A., Rahman, N.S., Ribeiro, D.A. and Uysal Onganer, P. 2020. Demonstration of microRNA using in situ hybridisation on formalin fixed paraffin wax samples using conventional oligonucleotide probes: a comparison with the use of locked nucleic acid probes. British Journal of Biomedical Science. 77 (3), pp. 135-141. https://doi.org/10.1080/09674845.2020.1748913

The Role of Differentially Expressed miRNAs and Potential miRNA-mRNA Regulatory Network in Prostate Cancer Progression and Metastasis
Arisan, E.D., Freitas, I.L., Pazoki, K., Rahim, S. and Uysal Onganer, P. 2020. The Role of Differentially Expressed miRNAs and Potential miRNA-mRNA Regulatory Network in Prostate Cancer Progression and Metastasis. Biomedical Journal of Technical and Scientific Research. 25 (4), pp. 19382-19387. https://doi.org/10.26717/BJSTR.2020.25.004241

Upregulated wnt-11 and mir-21 expression trigger epithelial mesenchymal transition in aggressive prostate cancer cells
Arisan, E.D., Rencuzogullari, O., Freitas, I.L., Radzali, S., Keskin, B., Kothari, A., Warford, A. and Uysal-Onganer, P. 2020. Upregulated wnt-11 and mir-21 expression trigger epithelial mesenchymal transition in aggressive prostate cancer cells. Biology. 9 (3) 52. https://doi.org/10.3390/biology9030052

Deiminated Proteins and Extracellular Vesicles as Novel Biomarkers in Pinnipeds: Grey seal (Halichoerus gryptus) and Harbour seal (Phoca vitulina)
Magnadóttir, B., Uysal Onganer, P., Kraev, I., Svansson, V., Skírnisson, K. and Lange, S. 2020. Deiminated Proteins and Extracellular Vesicles as Novel Biomarkers in Pinnipeds: Grey seal (Halichoerus gryptus) and Harbour seal (Phoca vitulina). Biochimie . 171-172, pp. 79-90. https://doi.org/10.1016/j.biochi.2020.02.017

Peptidylarginine Deiminase Isozyme-Specific PAD2, PAD3 and PAD4 Inhibitors Differentially Modulate Extracellular Vesicle Signatures and Cell Invasion in Two Glioblastoma Multiforme Cell Lines
Uysal Onganer, P., Amy MacLatchy, Rayan Mahmoud, Kraev, I., Paul R. Thompson, Jameel M. Inal and Lange, S. 2020. Peptidylarginine Deiminase Isozyme-Specific PAD2, PAD3 and PAD4 Inhibitors Differentially Modulate Extracellular Vesicle Signatures and Cell Invasion in Two Glioblastoma Multiforme Cell Lines. International Journal of Molecular Sciences. 21 (4) 1495. https://doi.org/10.3390/ijms21041495

Deiminated proteins and extracellular vesicles - Novel serum biomarkers in whales and orca
Magnadóttir, B., Uysal-Onganer, P., Kraev, I., Svansson, V., Hayes, P.M. and Lange, S. 2020. Deiminated proteins and extracellular vesicles - Novel serum biomarkers in whales and orca. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 34, p. 100676 100676. https://doi.org/10.1016/j.cbd.2020.100676

Extracellular Vesicles, Deiminated Protein Cargo and microRNAs are Novel Serum Biomarkers for Environmental Rearing Temperature in Atlantic Cod (Gadus morhua L.)
Magnadóttir, B., Uysal Onganer, P., Kraev, I., Dodds, A.W., Gudmundsdottir, S. and Lange, S. 2020. Extracellular Vesicles, Deiminated Protein Cargo and microRNAs are Novel Serum Biomarkers for Environmental Rearing Temperature in Atlantic Cod (Gadus morhua L.) . Aquaculture Reports. 16 100245. https://doi.org/10.1016/j.aqrep.2019.100245

Wnt-11 expression promotes invasiveness and correlates with survival in human pancreatic ductal adeno carcinoma
Dart, D.A., Arisan, D.E., Owen, S., Hao, C., Jiang, W.G. and Uysal-Onganer, P. 2019. Wnt-11 expression promotes invasiveness and correlates with survival in human pancreatic ductal adeno carcinoma. Genes. 10 (11) 921. https://doi.org/10.3390/genes10110921

Post-Translational Deimination of Immunological and Metabolic Protein Markers in Plasma and Extracellular Vesicles of Naked Mole-Rat (Heterocephalus glaber)
Matthew E. Pamenter, Uysal Onganer, P., Kenny W. Huynh, Kraev, I. and Lange, S. 2019. Post-Translational Deimination of Immunological and Metabolic Protein Markers in Plasma and Extracellular Vesicles of Naked Mole-Rat (Heterocephalus glaber). International Journal of Molecular Sciences. 20 (21) 5378. https://doi.org/10.3390/ijms20215378

Peptidylarginine Deiminases Post-translationally deiminate Prohibitin and modulate Extracellular Vesicle Release and microRNAs in Glioblastoma Multiforme
Kosgodage, U., Uysal Onganer, P., Maclatchy, A., Kraev, I., Chatterton, N.P., Nicholas, A.P., Inal, J.M. and Lange, S. 2019. Peptidylarginine Deiminases Post-translationally deiminate Prohibitin and modulate Extracellular Vesicle Release and microRNAs in Glioblastoma Multiforme . International Journal of Molecular Sciences. 20 (1) 103. https://doi.org/10.3390/ijms20010103

Cannabidiol Affects Extracellular Vesicle Release, miR21 and miR126, and Reduces Prohibitin Protein in Glioblastoma Multiforme Cells
Kosgodage, U., Uysal Onganer, P., Maclatchy, A., Mould, R., Nunn, A.V.W., Guy, G.W., Kraev, I., Chatterton, N.P., Thomas, E.L., Inal, J.M., Bell, J.D. and Lange, S. 2019. Cannabidiol Affects Extracellular Vesicle Release, miR21 and miR126, and Reduces Prohibitin Protein in Glioblastoma Multiforme Cells. Translational Oncology. 12 (3), pp. 513-522. https://doi.org/10.1016/j.tranon.2018.12.004

Cannabidiol (CBD) is a Novel Inhibitor for Exosome and Microvesicle (EMV) Release in Cancer
Kosgodage, U., Mould, R., Henley, A., Nunn, A.V.W., Guy, G.W., Thomas, E.L., Inal, J.M., Bell, J.D. and Lange, S. 2018. Cannabidiol (CBD) is a Novel Inhibitor for Exosome and Microvesicle (EMV) Release in Cancer. Frontiers in Pharmacology. 9 889. https://doi.org/10.3389/fphar.2018.00889

Training set edition using Rough Set Theory for Semi-supervised Classification
Grau, I., Nápoles, G., Sengupta, D., García Lorenzo, M.M. and Nowe, A. 2017. Training set edition using Rough Set Theory for Semi-supervised Classification. 2nd International Symposium on Fuzzy and Rough Sets. Villa Clara, Cuba 24 - 26 Oct 2017 Editorial Feijoó.

Prostate-specific PTen deletion in mice activates inflammatory microRNA expression pathways in the epithelium early in hyperplasia development
Dart Alwyn, D., Uysal-Onganer, P. and Jiang, W.G. 2017. Prostate-specific PTen deletion in mice activates inflammatory microRNA expression pathways in the epithelium early in hyperplasia development. Oncogenesis. 14 (6) 400. https://doi.org/10.1038/s41389-017-0007-5

A Framework for Morphological Feature Extraction of Organs from MR Images for Detection and Classification of Abnormalities
Villarini, B., Asaturyan, H., Thomas, E.L., Mould, R. and Bell, J.D. 2017. A Framework for Morphological Feature Extraction of Organs from MR Images for Detection and Classification of Abnormalities. Proceedings of the 30th IEEE International Symposium on Computer-Based Medical Systems (CBMS’17). Thessaloniki, Greece 22 - 24 Jun 2017 IEEE . https://doi.org/10.1109/CBMS.2017.49

Genomic Variant Classifier Tool
Grau, I., Sengupta, D., Farid, D.M., Manderick, B., Nowe, A., Garcia Lorenzo, M.M., Daneels, D., Bonduelle, M., Croes, D. and Van Dooren , S. 2016. Genomic Variant Classifier Tool. SAI Intelligent Systems Conference 2016. London 21 Sep 2016 Springer. https://doi.org/10.1007/978-3-319-56994-9_32

GeVaCT - Genomic Variant Classifier Tool
Daneels, D., Grau, I., Sengupta, D., Bonduelle, M.L., Farid, D., Croes, D., Nowé, A. and Van Dooren, S. 2016. GeVaCT - Genomic Variant Classifier Tool. European Journal of Human Genetics. 24 (E-Supplement 1), p. 341.

Grey-Box Model: An ensemble approach for addressing semi-supervised classification problems
Sengupta, D., Grau, I., Garcia Lorenzo, M.M. and Nowe, A. 2016. Grey-Box Model: An ensemble approach for addressing semi-supervised classification problems. Benelearn 2016: Belgian-Dutch Conference on Machine Learning. Katholieke Universiteit Leuven, Campus Kortrijk (KULAK) 12 - 13 Sep 2016

The interaction of Wnt-11 and signalling cascades in prostate cancer
Koushyar, S., Grant, G.H. and Uysal-Onganer, P. 2016. The interaction of Wnt-11 and signalling cascades in prostate cancer. Tumor Biology. 37 (10), pp. 13049-13057. https://doi.org/10.1007/s13277-016-5263-z

GEVACT: Genomic Variant Classifier Tool
Daneels, D., Grau, I., Sengupta, D., Bonduelle, M., Farid, D.M., Croes, D., Nowé, A. and Van Dooren, S. 2015. GEVACT: Genomic Variant Classifier Tool. BeSHG & NVHG First Joint Meeting “Genetics & Society”. Leuven, Belgium 04 - 05 Feb 2016

CliniPhenome: Clinical and Phenotypic Annotation Database
Sengupta, D., Croes, D., Van Dooren, S., Bonduelle, M. and Nowe, A. 2015. CliniPhenome: Clinical and Phenotypic Annotation Database. BeMGI Annual Meeting 2015. Ghent, Belgium

GeVaCT: Genomic Variant Classifier Tool
Grau, I., Daneels, D., Van Dooren, S., Bonduelle , M., Farid, D.M., Croes, D., Nowé, A. and Sengupta, D. 2015. GeVaCT: Genomic Variant Classifier Tool. 10th Benelux Bioinformatics Conference. University of Antwerp, Belgium 07 - 08 Dec 2015

CliniPhenome: Clinical and Phenotypic Annotation Database
Sengupta, D., Croes, D., Van Dooren, S., Bonduelle, M. and Nowe, A. 2015. CliniPhenome: Clinical and Phenotypic Annotation Database. 2nd International Conference on Health Informatics & Technology. Valencia, Spain 27 - 29 Jul 2015 OMICS Publishing Group.

Benchmarking pre-processing and batch effect removal methods for Insilico DB: Genomics Big Data Infrastructure
De Clerck, Q., Nowe, A., Coletta, A. and Sengupta, D. 2014. Benchmarking pre-processing and batch effect removal methods for Insilico DB: Genomics Big Data Infrastructure. 9th Benelux Bioinformatics Conference (BBC 2014). Novotel-Kirchberg, Luxembourg 08 - 09 Dec 2014

Homology Modeling of Bacteriocins: From sequence alignments to structural models
Atri, P., Sengupta, D., Verma, S., Ali, S. and Dey, G. 2014. Homology Modeling of Bacteriocins: From sequence alignments to structural models. International Journal of Scientific & Engineering Research. 5 (5), pp. 123-126.

Association rule mining based study for identification of clinical parameters akin to occurrence of brain tumor
Sengupta, D., Sood, M., Vijayvargia, P., Hota, S. and Naik, P.K. 2013. Association rule mining based study for identification of clinical parameters akin to occurrence of brain tumor. Bioinformation. 9 (11), pp. 555-559. https://doi.org/10.6026/97320630009555

Design of dimensional model for clinical data storage and analysis
Sengupta, D., Arora, P., Pant, S. and Naik, P.K. 2013. Design of dimensional model for clinical data storage and analysis. Applied Medical Informatics. 32 (2), pp. 47-53.

SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
Sengupta, D. and Naik, P.K. 2013. SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury. Journal of Clinical Bioinformatics. 3 24. https://doi.org/10.1186/2043-9113-3-24

TpPred: A Tool for Hierarchical Prediction of Transport Proteins Using Cluster of Neural Networks and Sequence Derived Features
Jain, S., Ranjan, P., Sengupta, D. and Naik, P.K. 2012. TpPred: A Tool for Hierarchical Prediction of Transport Proteins Using Cluster of Neural Networks and Sequence Derived Features. International Journal for Computational Biology. 1 (1), pp. 28-36.

Distinct expression and activity of GSK-3α and GSK-3β in prostate cancer
Darrington, R.S., Campa, V.M., Walker, M.M., Bengoa-Vergniory, N., Gorrono-Etxebarria, I., Uysal-Onganer, P., Kawano, Y., Waxman, J. and Kypta, R.M. 2012. Distinct expression and activity of GSK-3α and GSK-3β in prostate cancer. International Journal of Cancer. 131 (6), p. E872–E883. https://doi.org/10.1002/ijc.27620

Mode of interaction of calcium oxalate crystal with human phosphate cytidylyltransferase 1: a novel inhibitor purified from human renal stone matrix
Pathak, P., Naik, P.K., Sengupta, D., Singh, S.K. and Tandon, C. 2011. Mode of interaction of calcium oxalate crystal with human phosphate cytidylyltransferase 1: a novel inhibitor purified from human renal stone matrix. Journal of Biomedical Science and Engineering. 4 (9), pp. 591-598. https://doi.org/10.4236/jbise.2011.49075

Secreted Frizzled-related protein-1 is a negative regulator of androgen receptor activity in prostate cancer
Kawano, Y., Diez, S., Uysal-Onganer, P., Darrington, R.S., Waxman, J. and Kypta, R.M. 2009. Secreted Frizzled-related protein-1 is a negative regulator of androgen receptor activity in prostate cancer. British Journal of Cancer. 100, pp. 1165-1174. https://doi.org/10.1038/sj.bjc.6604976

Docking-MM-GB/SA and ADME screening of HIV-1 NNRTI inhibitor: Nevirapine and its analogues
Sengupta, D., Verma, D. and Naik, P.K. 2008. Docking-MM-GB/SA and ADME screening of HIV-1 NNRTI inhibitor: Nevirapine and its analogues. In Silico Biology. 8 (3-4), pp. 275-289.

Epidermal growth factor upregulates motility of Mat-LyLu rat prostate cancer cells partially via voltage-gated Na+ channel activity
Ding, Y., Brackenbury, W.J., Uysal Onganer, P., Montano, Ximena, Porter, L.M., Bates, L.F. and Djamgoz, M.B.A. 2008. Epidermal growth factor upregulates motility of Mat-LyLu rat prostate cancer cells partially via voltage-gated Na+ channel activity. Journal of Cellular Physiology. 215 (1), pp. 77-81. https://doi.org/10.1002/jcp.21289

Binding Modes, binding Affinities and ADME Screening of HIV-1 NNRTI Inhibitor: Efavirnez and its analogues.
Sengupta, D. 2007. Binding Modes, binding Affinities and ADME Screening of HIV-1 NNRTI Inhibitor: Efavirnez and its analogues. Online Journal of Bioinformatics. 8 (1), pp. 99-114.

In-silico TAT-PTD prediction for cell penetrating peptides
Tandon, C., Aggarwal, A., Goel, P., Sengupta, D. and Naik, P.K. 2007. In-silico TAT-PTD prediction for cell penetrating peptides. Online Journal of Bioinformatics. 8 (1), pp. 115-138.

Docking mode of delvardine and its analogues into the p66 domain of HIV-1 reverse transcriptase: Screening using molecular mechanics-generalized born/surface area and absorption, distribution, metabolism and excretion properties
Sengupta, D., Verma, D. and Naik, P.K. 2007. Docking mode of delvardine and its analogues into the p66 domain of HIV-1 reverse transcriptase: Screening using molecular mechanics-generalized born/surface area and absorption, distribution, metabolism and excretion properties. Journal of Biosciences. 32 (3), pp. 1307-1316. https://doi.org/10.1007/s12038-007-0140-y

Docking mode of delvardine and its analogues into the p66 domain of HIV-1 reverse transcriptase: screening using molecular mechanics-generalized born/surface area and absorption, distribution, metabolism and excretion properties
Sengupta, D., Verma, D. and Naik, P.K. 2007. Docking mode of delvardine and its analogues into the p66 domain of HIV-1 reverse transcriptase: screening using molecular mechanics-generalized born/surface area and absorption, distribution, metabolism and excretion properties. Journal of Biosciences. 32, pp. 1307-1316. https://doi.org/10.1007/s12038-007-0124-y

Clustering of HIV-I Subtype: Study of Molecular Diversity using Phylogenetic Analysis
Sengupta, D., Verma, D., Mishra, V.S. and Naik, P.K. 2006. Clustering of HIV-I Subtype: Study of Molecular Diversity using Phylogenetic Analysis. Bioinformatics Trends: A Journal of Bioinformatics and its Applications. 1 (1), pp. 1-12.

The expression and functional characterization of sigma (sigma) 1 receptors in breast cancer cell lines
Aydar, E., Uysal Onganer, P., Perrett, R., Djamgoz, M.B.A. and Palmer, C.P. 2006. The expression and functional characterization of sigma (sigma) 1 receptors in breast cancer cell lines. Cancer Letters. 242 (2), pp. 245-257. https://doi.org/10.1016/j.canlet.2005.11.011

An acetylcholinesterase-derived peptide inhibits endocytic membrane activity in a human metastatic breast cancer cell line
Uysal Onganer, P., Djamgoz, M.B.A., Whyte, K. and Greenfield, S.A. 2006. An acetylcholinesterase-derived peptide inhibits endocytic membrane activity in a human metastatic breast cancer cell line. Biochimica et Biophysica Acta: general subjects. 1760 (3), pp. 415-420. https://doi.org/10.1016/j.bbagen.2005.12.016

Small-cell lung cancer (human): potentiation of endocytic membrane activity by voltage-gated Na(+) channel expression in vitro
Uysal Onganer, P. and Djamgoz, M.B.A. 2005. Small-cell lung cancer (human): potentiation of endocytic membrane activity by voltage-gated Na(+) channel expression in vitro. Journal of Membrane Biology. 204, pp. 67-75. https://doi.org/10.1007/s00232-005-0747-6

Neuronal characteristics of small-cell lung cancer
Uysal Onganer, P., Seckl, M.J. and Djamgoz, M.B.A. 2005. Neuronal characteristics of small-cell lung cancer. British Journal of Cancer. 93, pp. 1197-1201. https://doi.org/10.1038/sj.bjc.6602857