Quantitative proteomic analysis of the response of the wood-rot fungus, Schizophyllum commune to the biocontrol fungus, Trichoderma viride

Ujor, V.C., Peiris, D., Monti, M., Kang, A.S., Clements, M.O. and Hedger, J.N. 2012. Quantitative proteomic analysis of the response of the wood-rot fungus, Schizophyllum commune to the biocontrol fungus, Trichoderma viride. Letters in Applied Microbiology. 54 (4), pp. 336-343.

TitleQuantitative proteomic analysis of the response of the wood-rot fungus, Schizophyllum commune to the biocontrol fungus, Trichoderma viride
AuthorsUjor, V.C., Peiris, D., Monti, M., Kang, A.S., Clements, M.O. and Hedger, J.N.
Abstract

Aims:  Investigation of changes in the protein profile of the wood-rot fungus, Schizophyllum commune when paired against the biocontrol fungus, Trichoderma viride for 48 hours. Methods and Results:  Variations in protein profile resulting from contact with T. viride were assessed by spot separation using 2-Dimensional protein gel electrophoresis followed by MALDI-TOF-TOF MS/MS protein identification. Contact with T. viride elicited a systematic response by S. commune, characterized by marked increases in proteins involved in transcription and translation (61%) and cell wall/hyphal biogenesis and stabilisation (17%), whereas metabolism-associated proteins decreased in amounts (64%). T. viride however, exhibited typical mycoparasitic behaviour with increases in the amounts of proteins involved in proteolysis and carbohydrate metabolism. Conclusions:  The protein profile of S. commune confronted by T. viride indicates the up-regulation of mechanisms specifically targeted at the mycoparasitic machinery of T. viride particularly cell wall lysis and antibiosis. Significance and Impact of the Study:  The proteomic responses observed in S. commune may occur in natural environments, providing an insight to the mechanism involved in conferring resistance to mycoparasitic attack. This study therefore, warrants further investigation for the targeted design of more robust biocontrol agents. © 2012 The Authors Letters in Applied Microbiology © 2012 The Society for Applied Microbiology.

JournalLetters in Applied Microbiology
Journal citation54 (4), pp. 336-343
ISSN0266-8254
Year2012
PublisherWiley
Digital Object Identifier (DOI)doi:10.1111/j.1472-765X.2012.03215.x
Publication dates
Published2012

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A structural framework for deciphering the link between I-Ag7 and autoimmune diabetes
Corper, A.L., Stratmann, T., Apostolopoulos, V., Scott, C.A., Garcia, K.C., Kang, A.S., Wilson, I.A. and Teyton, L. 2000. A structural framework for deciphering the link between I-Ag7 and autoimmune diabetes. Science. 288 (5465), pp. 505-511.

Expression of a functional antibody fragment in the gut of Rhodnius prolixus via transgenic bacterial symbiont Rhodococcus rhodnii
Durvasula, R.V., Gumbs, A., Panackal, A., Kruglov, O., Taneja, J., Kang, A.S., Cordon-Rosales, C., Richards, F.F., Whitham, R.G. and Beard, C.B. 1999. Expression of a functional antibody fragment in the gut of Rhodnius prolixus via transgenic bacterial symbiont Rhodococcus rhodnii. Medical and Veterinary Entomology. 13 (2), pp. 115-119.

Modulation of antibody display on M13 filamentous phage
Chappel, J.A., He, M. and Kang, A.S. 1998. Modulation of antibody display on M13 filamentous phage. Journal of Immunological Methods. 221 (1-2), pp. 25-34.

Recombinant immunocytokines targeting the mouse transferrin receptor: construction and biological activities
Dreier, T., Lode, H.N., Xiang, R., Dolman, C.S., Reisfeld, R.A. and Kang, A.S. 1998. Recombinant immunocytokines targeting the mouse transferrin receptor: construction and biological activities. Bioconjugate Chemistry. 9 (4), pp. 482-489.

Gene therapy with a single chain interleukin 12 fusion protein induces T cell-dependent protective immunity in a syngeneic model of murine neuroblastoma
Lode, H.N., Dreier, T., Xiang, R., Varki, N.M., Kang, A.S. and Reisfeld, R.A. 1998. Gene therapy with a single chain interleukin 12 fusion protein induces T cell-dependent protective immunity in a syngeneic model of murine neuroblastoma. Proceedings of the National Academy of Sciences. 95 (5), pp. 2475-2480.

Bacterial expression and purification of recombinant Plasmodium yoelii circumsporozoite protein
Stratmann, T., Schmida, S.R., Harperb, J.F. and Kang, A.S. 1997. Bacterial expression and purification of recombinant Plasmodium yoelii circumsporozoite protein. Protein Expression and Purification. 11 (1), pp. 72-78.

Cloning and expression of a single-chain antibody fragment specific for foot-and-mouth disease virus
Mason, P.W., Berinstein, A., Baxt, B., Parsells, R., Kang, A.S. and Reider, E. 1996. Cloning and expression of a single-chain antibody fragment specific for foot-and-mouth disease virus. Virology. 224 (2), pp. 548-554.

Propagation of an attenuated virus by design: Engineering a novel receptor for a noninfectious foot-and-mouth disease virus
Rieder, E., Berinstein, A., Baxt, B., Kang, A.S. and Mason, P.W. 1996. Propagation of an attenuated virus by design: Engineering a novel receptor for a noninfectious foot-and-mouth disease virus. Proceedings of the National Academy of Sciences. 91 (19), pp. 10428-10433.

Functional expression of a single-chain anti-progesterone antibody fragment in the cytoplasm of a mutant Escherichia coil
He, M., Hamon, M., Liu, H., Kang, A.S. and Taussig, M.J. 1995. Functional expression of a single-chain anti-progesterone antibody fragment in the cytoplasm of a mutant Escherichia coil. Nucleic Acids Research. 23 (19), pp. 4009-4010.

Characterization of a progesterone-binding, three-domain antibody fragment (VH/K) expressed in Escherichia coli
He, M., Kang, A.S., Hamon, M., Humphreys, A.S., Gani, M. and Taussig, M.J. 1995. Characterization of a progesterone-binding, three-domain antibody fragment (VH/K) expressed in Escherichia coli. Immunology. 84 (4), pp. 662-668.

Properties of a three domain anti-progesterone antibody fragment expressed in Escherichia coli: comparison of periplasmic, culture medium and refolded forms
He, M., Hamon, M., Liu, H., Gani, M., Kang, A.S. and Taussig, M.J. 1995. Properties of a three domain anti-progesterone antibody fragment expressed in Escherichia coli: comparison of periplasmic, culture medium and refolded forms. Tumor Targeting. 1, pp. 267-274.

Crystallization, sequence and preliminary crystallographic data for transmission-blocking anti-malaria Fab 4B7 with cyclic peptides from the Pfs25 protein of P. falciparum
Stura, E.A., Kang, A.S., Stefanko, R.S., Calvo, J.C., Kaslow, D.C. and Satterthwait, A.C. 1994. Crystallization, sequence and preliminary crystallographic data for transmission-blocking anti-malaria Fab 4B7 with cyclic peptides from the Pfs25 protein of P. falciparum. Acta Crystallographica. D50 (4), pp. 535-542.

Antibodies without immunization
Lerner, R.A., Kang, A.S., Bain, J.D., Burton, D.R. and Barbas III, C.F. 1992. Antibodies without immunization. Science. 258 (5086), pp. 1313-1314.

In vitro selection and affinity maturation of antibodies from a naive combinatorial immunoglobulin library
Gram, H., Marconi, L.A., Barbas III, C.F., Collet, T.A., Lerner, R.A. and Kang, A.S. 1992. In vitro selection and affinity maturation of antibodies from a naive combinatorial immunoglobulin library. Proceedings of the National Academy of Sciences. 89 (8), pp. 3576-3580.

Antibody redesign by chain shuffling from random combinatorial immunoglobulin libraries
Kang, A.S., Jones, T.M. and Burton, D.R. 1991. Antibody redesign by chain shuffling from random combinatorial immunoglobulin libraries. Proceedings of the National Academy of Sciences. 88 (24), pp. 11120-11123.

On the use of combinatorial antibody libraries to clone the "fossil record" of an individual's immune response
Lerner, R.A., Barbas III, C.F., Kang, A.S. and Burton, D.R. 1991. On the use of combinatorial antibody libraries to clone the "fossil record" of an individual's immune response. Proceedings of the National Academy of Sciences. 88 (21), pp. 9705-9706.

Assembly of combinatorial antibody libraries on phage surfaces: the gene III site
Barbas III, C.F., Kang, A.S., Lerner, R.A. and Benkovic, S.J. 1991. Assembly of combinatorial antibody libraries on phage surfaces: the gene III site. Proceedings of the National Academy of Sciences. 88 (18), pp. 7978-7982.

Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces
Kang, A.S., Barbas III, C.F., Janda, K.J., Benkovic, S.J. and Lerner, R.A. 1991. Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces. Proceedings of the National Academy of Sciences. 88 (10), pp. 4363-4366.

Combinatorial immunoglobulin libraries in phage
Kang, A.S., Burton, D.R. and Lerner, R.A. 1991. Combinatorial immunoglobulin libraries in phage. Methods: a Companion to Methods in Enzymology. 2 (2), pp. 111-118.

Catalytic antibodies-designer enzymes
Kang, A.S., Kingsbury, G.A., Blackburn, G.M. and Burton, D.R. 1990. Catalytic antibodies-designer enzymes. Chemistry in Britain.

Catalytic antibodies
Kang, A.S., Burton, D.R. and Blackburn, G.M. 1990. Catalytic antibodies. Analytical Proceedings. 27, pp. 6-12.

Generation of a large combinatorial library of the immunoglobulin repertoire in phage lambda
Huse, W.D., Sastry, L., Iverson, S.A., Kang, A.S., Alting-Mees, M., Burton, D.R., Benkovic, S.J. and Lerner, R.A. 1989. Generation of a large combinatorial library of the immunoglobulin repertoire in phage lambda. Science. 246 (4935), pp. 1275-1281.

Low-resolution epitope characterisation in a family of seed apolipoproteins using polyclonal antibodies
Au, D.M.Y., Kang, A.S. and Murphy, D.J. 1989. Low-resolution epitope characterisation in a family of seed apolipoproteins using polyclonal antibodies. Biochimica et Biophysica Acta: Lipids and Lipid Metabolism. 1005 (1), pp. 97-102.

An immunologically related family of apolipoproteins associated with triacylglycerol storage in the Cruciferae
Au, D.M.Y., Kang, A.S. and Murphy, D.J. 1989. An immunologically related family of apolipoproteins associated with triacylglycerol storage in the Cruciferae. Archives of Biochemistry and Biophysics. 273 (2), pp. 516-526.

Catalytic antibodies
Blackburn, G.M., Kang, A.S., Kingsbury, G.A. and Burton, D.R. 1989. Catalytic antibodies. Biochemical Journal. 262 (2), pp. 381-390.

Synthesis of the major oil-body membrane protein in developing rapeseed (Brassica napus) embryos. Integration with storage-lipid and storage-protein synthesis and implications for the mechanism of oil-body formation
Murphy, D.J., Cummins, I. and Kang, A.S. 1989. Synthesis of the major oil-body membrane protein in developing rapeseed (Brassica napus) embryos. Integration with storage-lipid and storage-protein synthesis and implications for the mechanism of oil-body formation. Biochemical Journal. 258 (1), pp. 285-293.

Immunological investigation of lipases in germinating oilseed rape, Brassica napus
Murphy, D.J., Cummins, I. and Kang, A.S. 1989. Immunological investigation of lipases in germinating oilseed rape, Brassica napus. Journal of the Science of Food and Agriculture. 47, pp. 21-31.

ELISA of aflatoxins
Wilkinson, A.P., Kang, A.S., Chan, H.W.S. and Morgan, M.R.A. 1988. ELISA of aflatoxins. in: Morris, B.A., Clifford, M.N. and Jackman, R. (ed.) Immunoassays for veterinary and food analysis - 1 London, UK Elsevier. pp. 343-345

Novel hapten-protein conjugation methods for the synthesis of immunogens and coating conjugates for use in ELISA
Kang, A.S., Chan, H.W.S. and Morgan, M.R.A. 1988. Novel hapten-protein conjugation methods for the synthesis of immunogens and coating conjugates for use in ELISA. in: Morris, B.A., Clifford, M.N. and Jackman, R. (ed.) Immunoassays for veterinary and food analysis - 1 London, UK Elsevier. pp. 271-273

Assay of gene expression by immunodetection
Kang, A.S. and Abbott, S.J. 1988. Assay of gene expression by immunodetection. in: Robins, R.J. and Rhodes, M.J.C. (ed.) Manipulating secondary metabolism in culture Oxford University Press.

Expression of legumin sequences in pea, Nicotiana and yeast
Croy, R.R.D., Evans, I.M., Yarwood, J.N., Harris, N., Gatehouse, J.A., Shirsat, A.H., Kang, A.S., Ellis, J.R., Thompson, A.J. and Boulter, D. 1988. Expression of legumin sequences in pea, Nicotiana and yeast. Biochemie und Physiologie der Pflanzen. 183, pp. 183-197.

Production of antisera against sterigmatocystin and its use in an enzyme-linked immunosorbent assay for sterigmatocystin in barley
Morgan, M.R.A., Kang, A.S. and Chan, H.W.S. 1986. Production of antisera against sterigmatocystin and its use in an enzyme-linked immunosorbent assay for sterigmatocystin in barley. Journal of the Science of Food and Agriculture. 37 (9), pp. 873-880.

Aflatoxin determination in peanut butter by enzyme-linked immunosorbent assay
Morgan, M.R.A., Kang, A.S. and Chan, H.W.S. 1986. Aflatoxin determination in peanut butter by enzyme-linked immunosorbent assay. Journal of the Science of Food and Agriculture. 37 (9), pp. 908-914.

Effects of nutrition on the interaction of Fusarium oxysporum and Sunn-hemp mosaic virus in cowpea seedlings
Chant, S.R., Gbaja, I.S. and Kang, A.S. 1984. Effects of nutrition on the interaction of Fusarium oxysporum and Sunn-hemp mosaic virus in cowpea seedlings. Tropical Agriculture. 61 (2), pp. 87-91.

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