Life Sciences

Yuksel, M., Wang, Y., Tai, N., Peng, J., Guo, J., Beland, K., Lapierre, P., David, C., Alvarez, F., Colle, I., Yan, H., Mieli-Vergani, G., Vergani, D., Ma, Y. and Wen, L. 2015. A novel "humanized mouse" model for autoimmune hepatitis and the association of gut microbiota with liver inflammation. Hepatology. 62 (5), pp. 1536-1550. https://doi.org/10.1002/hep.27998

Xystrakis, E., Yuksel, M., Lin, F., Huang, X., Pop, O.T., Quaglia, A., Heaton, N., Prachalias, A., Rela, M., Fuggle, S., Ma, Y. and Jassem, W. 2015. Impact of donation mode on the proportion and function of T lymphocytes in the liver. PLoS ONE. 10 (10) e0139791. https://doi.org/10.1371/journal.pone.0139791

Pulcini, Serena, Staines, Henry M., Lee, Andrew H., Shafik, Sarah H., Bouyer, Guillaume, Moore, Catherine M., Daley, Daniel A., Hoke, Matthew J., Altenhofen, Lindsey M., Painter, Heather J., Mu, Jianbing, Ferguson, David J.P., Llinás, Manuel, Martin, Rowena E., Fidock, David A., Cooper, Roland A. and Krishna, Sanjeev 2015. Mutations in the Plasmodium falciparum chloroquine resistance transporter, PfCRT, enlarge the parasite's food vacuole and alter drug sensitivities. Scientific Reports. 5 14552. https://doi.org/10.1038/srep14552

Karla Bianca Neves, Aurelie Nguyen Dinh Cat, Rheure Alves Moreira Lopes, Francisco Jose Rios, Aikaterini Anagnostopoulou, Nubia Souza Lobato, Ana Maria de Oliveira, Rita C. Tostes, Augusto C. Montezano and Rhian M. Touyz 2015. Chemerin Regulates Crosstalk Between Adipocytes and Vascular Cells Through Nox. Hypertension. 66 (3), pp. 657-666. https://doi.org/10.1161/hypertensionaha.115.05616

Martin Kolisek, Augusto C. Montezano, Gerhard Sponder, Aikaterini Anagnostopoulou, Juergen Vormann, Rhian M. Touyz and Joerg R. Aschenbach 2015. PARK7/DJ-1 dysregulation by oxidative stress leads to magnesium deficiency: implications in degenerative and chronic diseases. Clinical Science. 129 (12), pp. 1143-1150. https://doi.org/10.1042/cs20150355

Thom, M., Liu, J., Reeves, C., Stopps, V., Sisodiya, S.M. and Liu, J.Y.W. 2015. A cautionary note in the interpretation of human papillomavirus E6 immunohistochemistry in focal cortical dysplasia. Annals of Neurology. 77 (2), pp. 352-353. https://doi.org/10.1002/ana.24330

Klaassens, B.L., van Gorsel, H.C., Khalili-Mahani, N., van der Grond, J., Wyman, B.T., Whitcher, B., Rombouts, S.A.R.B. and van Gerven, J.M.A. 2015. Single-dose serotonergic stimulation shows widespread effects on functional brain connectivity. NeuroImage. 122, pp. 440-450. https://doi.org/10.1016/j.neuroimage.2015.08.012

Doyle, O.M., Bois, C., Thomson, P., Romaniuk, L., Whitcher, B., Williams, S.C.R., Turkheimer, F.E., Stefansson, H., McIntosh, A.M., Mehta, M.A. and Lawrie, S.M. 2015. The cortical thickness phenotype of individuals with DISC1 translocation resembles schizophrenia. Journal of Clinical Investigation. 125 (9), pp. 3714-3722. https://doi.org/10.1172/jci82636

Whalley, H.C., Dimitrova, R., Sprooten, E., Dauvermann, M.R., Romaniuk, L., Duff, B., Watson, A.R., Moorhead, B., Bastin, M., Semple, S.I., Giles, S., Hall, J., Thomson, P., Roberts, N., Hughes, Z.A., Brandon, N.J., Dunlop, J., Whitcher, B., Blackwood, D.H.R., McIntosh, A.M. and Lawrie, S.M. 2015. Effects of a balanced translocation between chromosomes 1 and 11 disrupting the DISC1 locus on white matter integrity. PLoS ONE. 10 (6) e0130900. https://doi.org/10.1371/journal.pone.0130900

Patel, V.B and Preedy, V.R. Patel, V.B. and Preedy, V.R. (ed.) 2015. Betaine: Chemistry, Analysis, Function and Effects (Food and Nutritional Components in Focus). Royal Society of Chemistry.

Mehta, K., Farnaud, S. and Patel, V.B. 2015. Molecular effects of alcohol on iron metabolism . in: Patel, V.B. (ed.) Molecular Aspects of Alcohol and Nutrition Academic Press.

Ghazali, R. and Patel, V.B. 2015. Alcohol Metabolism: General Aspects. in: Patel, V.B. (ed.) Molecular Aspects of Alcohol and Nutrition Academic Press.

Khawaja, I., Safi, A., Collins, P., Nevill, A. and Woodfield, L. 2015. The measurement of physical activity behaviours of young people. International Society of Behavioural Nutrition and Physical Activity Annual Conference 2015. Edinburgh International Conference Centre, Edinburgh, Scotland 03 - 06 Jun 2015

Daneels, D., Grau, I., Sengupta, D., Bonduelle, M., Farid, D.M., Croes, D., Nowé, A. and Van Dooren, S. 2015. GEVACT: Genomic Variant Classifier Tool. BeSHG & NVHG First Joint Meeting “Genetics & Society”. Leuven, Belgium 04 - 05 Feb 2016

Sengupta, D., Croes, D., Van Dooren, S., Bonduelle, M. and Nowe, A. 2015. CliniPhenome: Clinical and Phenotypic Annotation Database. BeMGI Annual Meeting 2015. Ghent, Belgium

Grau, I., Daneels, D., Van Dooren, S., Bonduelle , M., Farid, D.M., Croes, D., Nowé, A. and Sengupta, D. 2015. GeVaCT: Genomic Variant Classifier Tool. 10th Benelux Bioinformatics Conference. University of Antwerp, Belgium 07 - 08 Dec 2015

Sengupta, D., Croes, D., Van Dooren, S., Bonduelle, M. and Nowe, A. 2015. CliniPhenome: Clinical and Phenotypic Annotation Database. 2nd International Conference on Health Informatics & Technology. Valencia, Spain 27 - 29 Jul 2015 OMICS Publishing Group.

Rallapalli, G., Players, F., Saunders, D.G., Yoshida, K., Edwards, A., Lugo, C.A., Collin, S., Clavijo, B., Corpas, M., Swarbreck, D., Clark, M., Downie, J.A., Kamoun, S., Cooper, T. and Maclean, D. 2015. Cutting Edge: Lessons from fraxinus, a crowd-sourced citizen science game in genomics. eLife. 4 e07460. https://doi.org/10.7554/elife.07460

Atwood, T.K., Bongcam-Rudloff, E., Brazas, M.E., Corpas, M., Gaudet, P., Lewitter, F., Mulder, N., Palagi, P.M., Schneider, M.V., van Gelder, C.W.G., Attwood, T.K., Banag, C., Blackford, S., Blatter, M.C., Bongcam-Rudloff, E., Brazas, M.D., Brooksbank, C., Budd, A., Charleston, M., Christoffels, A., Conesa, A., Crowe, M., Davies, A., de Crecy-Lagard, V., De Las Rivas, J., Doyle, M., Edwards, R., Facchiano, A., Fernandes, P., Gaeta, B., Gaudet, P., Heger, A., Herringa, J., Hughes, D., Jimenez, R.C., Kille, P., Korpelainen, E., Kumuthini, J., Lewitter, F., MacLean, D., Martinez, S.A.R., McGrath, A., Michalopoulos, I., Mulder, N., Ouellette, B.F., Palagi, P.M., Pearson, W.R., Qi, W., Romano, P., Rother, K., Sansone, S-A., Schneider, M.V., Schönbach, C., Tastan-Bishop, O., Trelles, O., Twells, R., van Gelder, C.W.G., Via, A., Vriend, G., Warnow, T., Watson, M., Westervelt, N. and Zanzoni, A. 2015. GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLOS Computational Biology. 11 (5) e1004281. https://doi.org/10.1371/journal.pcbi.1004143

Corpas, M., Valdivia-Granda, W., Torres, N., Greshake, B., Coletta, A., Knaus, A., Harrison, A.P., Cariaso, M., Moran, F., Nielsen, F., Swan, D., Weiss Solís, D.Y., Krawitz, P., Schacherer, F., Schols, P., Yang, H., Borry, P., Glusman, G. and Robinson, P.N. 2015. Crowdsourced direct-to-consumer genomic analysis of a family quartet. BMC Genomics. 16 910. https://doi.org/10.1186/s12864-015-1973-7

Budd, A., Corpas, M., Brazas, M.D., Fuller, J.C., Goecks, J., Mulder, N.J., Michaut, M., Ouellette, B.F.F., Pawlik, A. and Blomberg, N. 2015. A Quick Guide for Building a Successful Bioinformatics Community. PLOS Computational Biology. 11 (2) e1003972. https://doi.org/10.1371/journal.pcbi.1003972

Corpas, M., Jimenez, R.C., Bongcam-Rudloff, E., Budd, A., Brazas, M.D., Fernandes, P.L., Gaeta, B., Van Gelder, C., Korpelainen, E., Lewitter, F., McGrath, A., MacLean, D., Palagi, P.M., Rother, K., Taylor, J., Via, A., Watson, M., Schneider, M.V. and Attwood, T.K. 2015. The GOBLET training portal: A global repository of bioinformatics training materials, courses and trainers. Bioinformatics. 31 (1), pp. 140-142. https://doi.org/10.1093/bioinformatics/btu601

Budd, A., Dinkel, H., Corpas, M., Fuller, J.C., Rubinat, L., Devos, D.P., Khoueiry, P.H., Förstner, K.U., Georgatos, F., Rowland, F., Sharan, M., Binder, J.X., Grace, T., Traphagen, K., Gristwood, A. and Wood, N.T. 2015. Ten Simple Rules for Organizing an Unconference. PLOS Computational Biology. 11 (1) e1003905. https://doi.org/10.1371/journal.pcbi.1003905

Duarte, A.M.S., Psomopoulos, F.E., Blanchet, C., Bonvin, A.M.J.J., Corpas, M., Franc, A., Jimenez, R.C., de Lucas, J.M., Nyrönen, T., Sipos, G. and Suhr, S.B. 2015. Future opportunities and trends for e-infrastructures and life sciences: Going beyond the grid to enable life science data analysis. Frontiers in Genetics. 6 197. https://doi.org/10.3389/fgene.2015.00197

Yachdav, G., Goldberg, T., Wilzbach, S., Dao, D., Shih, I., Choudhary, S., Crouch, S., Franz, M., García, A., García, L.J., Grüning, B.A., Inupakutika, D., Sillitoe, I., Thanki, A.S., Vieira, B., Villaveces, J.M., Schneider, M.V., Lewis, S., Pettifer, S., Rost, B. and Corpas, M. 2015. Anatomy of BioJS, an open source community for the life sciences. eLife. 2015;4 e07009. https://doi.org/10.7554/elife.07009.001

Budd, A., Corpas, M., Brazas, M.D., Fuller, J.C., Goecks, J., Mulder, N.J., Michaut, M., Ouellette, B.F.F., Pawlik, A. and Blomberg, N. 2015. A quick guide for building a successful bioinformatics community. PLOS Computational Biology. 11 (2) e1003972. https://doi.org/10.1371/journal.pcbi.1003972

Torraca, V., Cui, Chao, Boland, Ralf, Bebelman, Jan-Paul, van der Sar, Astrid M., Smit, Martine J., Siderius, Marco, Spaink, Herman P. and Meijer, Annemarie H. 2015. The CXCR3-CXCL11 signaling axis mediates macrophage recruitment and dissemination of mycobacterial infection. Disease Models and Mechanisms. 8 (3), pp. 253-269. https://doi.org/10.1242/dmm.017756

Gaze, D.C. 2015. Obesity: Subclinical cardiac damage and heart failure. Annals of Clinical Biochemistry. 52 (2), p. 302. https://doi.org/10.1177/0004563215570547

Sawyer, E.B., Edgeworth, J.A., Thomas, C., Collinge, J. and Jackson, G.S. 2015. Preclinical detection of infectivity and disease-specific PrP in blood throughout the incubation period of prion disease. Scientific Reports. 5 17742. https://doi.org/10.1038/srep17742

Lizarraga Valderrama, L., Nigmatullin, R., Taylor, C., Haycock, J.W., Claeyssens, F., Knowles, J.C. and Roy, I. 2015. Nerve tissue engineering using blends of poly(3-hydroxyalkanoates) for peripheral nerve regeneration. Engineering in Life Sciences. 15 (6), pp. 612-621. https://doi.org/10.1002/elsc.201400151

Chen, E., Schneider, R.K., Breyfogle, L.J., Rosen, E.A., Poveromo, L., Elf, S., Ko, A., Brumme, K., Levine, R., Ebert, B.L. and Mullally, A. 2015. Distinct effects of concomitant Jak2V617F expression and Tet2 loss in mice combine to promote disease progression in myeloproliferative neoplasms. Blood. 125, pp. 327-335. https://doi.org/10.1182/blood-2014-04-567024

Tapper, W., Jones, A.V., Kralovics, R., Harutyunyan, A.S., Zoi, K., Leung, W., Godfrey, A.L., Guglielmelli, P., Callaway, A., Ward, D., Aranaz, P., White, H.E., Waghorn, K., Lin, F., Chase, A., Baxter, E.J., Maclean, C., Nangalia, J., Chen, E., Evans, P., Short, M., Jack, A., Wallis, L., Oscier, D., Duncombe, A.S., Schuh, A., Mead, A.J., Griffiths, M., Ewing, J., Gale, R.E., Schnittger, S., Haferlach, T., Stegelmann, F., Dohner, K., Grallert, H., Strauch, K., Tanaka, T., Bandinelli, S., Giannopoulos, A., Pieri, L., Mannarelli, C., Gisslinger, H., Barosi, G., Cazzola, M., Reiter, A., Harrison, C., Campbell P., Green, A.R., Vannucchi, A. and Cross N.C. 2015. Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms. Nature Communications . 6 6691. https://doi.org/10.1038/ncomms7691

Chen, E., Ahn, J.S., Sykes, D.B., Breyfogle, L.J., Godfrey, A.L., Nangalia, J., Ko, A., DeAngelo, D.J., Green, A.R. and Mullally, A. 2015. RECQL5 suppresses oncogenic JAK2-induced replication stress and genomic instability. Cell Reports. 13, pp. 2345-2532. https://doi.org/10.1016/j.celrep.2015.11.037

Vadgama, N., Gaze, D.C., Ranson, J., Hardy, J. and Nasir, J. 2015. Elevated γ-Glutamyltransferase and Erythrocyte Sedimentation Rate in Ischemic Stroke in Discordant Monozygotic Twin Study. International Journal of Stroke. 10 (4), pp. E32-E33. https://doi.org/10.1111/ijs.12440

Ong, P., Carro, A., Athanasiadis, A., Borgulya, G., Schäufele, T., Ratge, D., Gaze, D.C., Sechtem, U. and Kaski, J. 2015. Acetylcholine-induced coronary spasm in patients with unobstructed coronary arteries is associated with elevated concentrations of soluble CD40 ligand and high-sensitivity C-reactive protein. Coronary Artery Disease. 26 (2), pp. 126-132. https://doi.org/10.1097/mca.0000000000000181

Leeder, J., van Someren, K., Bell, P., Spence, J., Jewell, A., Gaze, D.C. and Howatson, G. 2015. Effects of seated and standing cold water immersion on recovery from repeated sprinting. Journal of Sports Sciences. 33 (15), pp. 1544-1552. https://doi.org/10.1080/02640414.2014.996914

Lazzarino, A., Hamer, M., Gaze, D.C., Collinson, P., Rumley, A., Lowe, G. and Steptoe, A. 2015. The association between fibrinogen reactivity to mental stress and high-sensitivity cardiac troponin T in healthy adults. Psychoneuroendocrinology. 59, pp. 37-48. https://doi.org/10.1016/j.psyneuen.2015.05.002

Lazzarino, A., Hamer, M., Carvalho, L., Gaze, D.C., Collinson, P. and Steptoe, A. 2015. The mediation of coronary calcification in the association between risk scores and cardiac troponin T elevation in healthy adults: Is atherosclerosis a good prognostic precursor of coronary disease? Preventive Medicine. 77, pp. 150-154. https://doi.org/10.1016/j.ypmed.2015.05.025

de Silva, R., Tsujioka, H., Gaze, D.C., Banya, W., Shah, B., Zoppelaro, G., Hersey, J., Gonzalez, A., Collins, P., Collinson, P., Senior, R. and Fox, K. 2015. Serial Changes in High-Sensitivity Cardiac Troponin, N-terminal Pro-B-Type Natriuretic Peptide, and Heart Fatty Acid Binding Protein during Exercise Echocardiography in Patients with Suspected Angina Pectoris and Normal Resting Left Ventricular Function. Clinical Chemistry. 61 (3), pp. 554-556. https://doi.org/10.1373/clinchem.2014.228536

Collinson, P., Gaze, D.C. and Goodacre, S. 2015. The clinical and diagnostic performance characteristics of the high sensitivity Abbott cardiac troponin I assay. Clinical Biochemistry. 48 (4-5), pp. 275-281. https://doi.org/10.1016/j.clinbiochem.2014.12.017